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  3. RAFL06-74-P05

RAFL06-74-P05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03535)

full reading [+] show sequence

Nucleotide sequence: RAFL06-74-P05 - full reading 
ATCTATCGCA AAACTCTCCC GTCGTCACCA TTCGATTACG GGAGTGTAAT 
GGCTCTTATA CAATTTGGAA GTTCATGTGT TGCTCAATGG GGGATTCTTC 
GTCCTCGGTT TGCTGTTAAA GCTTTTTATC CAAGCAGATT GGAGTCTCAC 
CAAGACAATT GCATCAGCCA AATAAATTGT CTGGGAGCTT CAAGGTCGAG 
TATGTTTGCA CAGGGCTCTT TACCCTTCTT GTCATTGACG GGAGTATCTC 
CTAATACACA TTCTCGTAGA GGAGCTCGCT TCACTGTTAG AGCTGATACT 
GATTTCTATT CTGTCCTTGG AGTCTCGAAA AATGCAACCA AAGCTGAGAT 
TAAAAGCGCT TATCGGAAGC TCGCTAGGAG TTATCATCCA GATGTGAACA 
AGGATGCTGG GGCAGAAGAT AAATTTAAAG AAATAAGTAA TGCATATGAG 
ATCTTATCAG ATGATGAGAA AAGATCTCTA TACGACAGAT ATGGCGAGGC 
AGGAGTTAAA GGCGCTGGAA TGGGAGGCAT GGGGGATTAT AGTAATCCGT 
TTGATCTATT TGAGTCATTA TTCGAAGGAA TGGGTGGGAT GGGAGGAATG 
GGCGGTGGAA TGGGTAGTAG AGGTTCAAGG AGCAGAGCTA TCGATGGTGA 
AGATGAGTAT TACTCACTAA TCTTGAATTT CAAAGAAGCG GTTTTCGGTA 
TTGAGAAAGA AATTGAGATA TCTCGGTTAG AGAGCTGTGG GACTTGCAAT 
GGTTCTGGAG CTAAAGCGGG AACCAAACCA ACCAAATGCA AAACATGTGG 
CGGGCAAGGA CAGGTGGTAG CATCAACGAG GACACCACTC GGTGTATTCC 
AACAAGTGAT GACTTGCTCT CCGTGTAACG GAACTGGGGA GATATCAAAA 
CCGTGTGGTG CATGCTCAGG AGATGGACGT GTGAGAAGGA CAAAGCGGAT 
TAGTCTTAAA GTTCCTGCGG GTGTGGATTC TGGAAGTAGG TTAAGAGTGA 
GGGGAGAAGG GAATGCAGGA AAGAGAGGTG GATCACCGGG AGATCTCTTT 
GCGGTTATTG AGGTTATTCC AGATCCGGTT TTGAAGCGTG ATGATACAAA 
TATACTTTAT ACGTGTAAGA TATCGTATGT AGATGCCATA TTGGGGACGA 
CTTTGAAGGT ACCAACAGTG GATGGAGAGG TGGATTTGAA AGTACCGGCA 
GGGACACAAC CAAGCACGAC ATTGGTGATG GCTAAAAAAG GAGTTCCGGT 
TTTGAATAAG AGCAAGATGA GAGGTGATCA GTTAGTGAGA GTGCAAGTTG 
AGATTCCTAA GAGATTGAGT AAAGAAGAGA AGATGCTTGT TGAGGAGCTG 
GCTGATATGA GCAAGAACAA GGTAGCTAAT AGCAGGAGAT AAACCAACAC 
ACAATATTAG TGAAATGTGA TGTTATATAG ATTCATCATT CTCTGCTTGT 
CGTCTTTCTA ATGGTTCGTC TAACGATGGA GAAGATAAGC AAGAGGCAAA 
AGAAAGACTT ATTAGGTGAG AGGAAAATTT GAAGAACTCT GGTTTTGGGT 
TTTCCTCTTC AATTTTTGTG TTTTACTTTT AAAACAAATT TTATGGATTT 
ATCAGGATTC AGGGTAGGTC TTGATTGTAT TGTACTGCTA TTTTTATACA 
TTTGAATCTT CTTTTCTTAT TAATGAAAAT TTTATCAAAC G

Gene models with high sequence identity

  1. AT4G39960.1 [+] show detail - Molecular chaperone Hsp40/DnaJ family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Heat shock protein DnaJ, N-terminal 6e-35
superfamily HSP40/DnaJ peptide-binding 4.9e-22
superfamily Heat shock protein DnaJ, cysteine-rich domain 2e-17
superfamily HSP40/DnaJ peptide-binding 3.8e-17
ProfileScan Heat shock protein DnaJ, N-terminal 23.826
ProfileScan Heat shock protein DnaJ, cysteine-rich domain 24.59
HMMTigr Chaperone DnaJ 1e-204
Gene3D Heat shock protein DnaJ, N-terminal 8.3e-27
Gene3D Heat shock protein DnaJ, cysteine-rich domain 1.3e-16
Gene3D no description 3.3e-22
PatternScan Heat shock protein DnaJ, conserved site 0
HMMSmart Heat shock protein DnaJ, N-terminal 4.2e-30
HMMPanther CHAPERONE PROTEIN DNAJ 5.3e-170
HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 5.3e-170
FPrintScan Heat shock protein DnaJ 6.4e-49
FPrintScan Heat shock protein DnaJ 6.4e-49
FPrintScan Heat shock protein DnaJ 6.4e-49
FPrintScan Heat shock protein DnaJ 6.4e-49
FPrintScan Heat shock protein DnaJ 6.4e-49
FPrintScan Heat shock protein DnaJ 6.4e-49
FPrintScan Heat shock protein DnaJ 6.4e-49
FPrintScan Heat shock protein DnaJ 6.4e-49
HAMAP Chaperone DnaJ 33.264
HMMPfam Chaperone DnaJ, C-terminal 1.4e-27
HMMPfam Heat shock protein DnaJ, N-terminal 4.1e-27
HMMPfam Heat shock protein DnaJ, cysteine-rich domain 2.1e-18

See the detailed result >

AT4G39960.1

Model type
Protein coding
Short Description
Molecular chaperone Hsp40/DnaJ family protein
Computational Description
Molecular chaperone Hsp40/DnaJ family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding, ATP binding; INVOLVED IN: protein folding, response to heat; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253), Heat shock protein DnaJ, cysteine-rich domain (InterPro:IPR001305), Chaperone DnaJ (InterPro:IPR012724), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT2G22360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-74-P05 introduced

  • F04418 - Specific phenotypes were NOT observed.
  • F08346 - seed::increased size / seed::increased length
  • F15431 - seed::increased size
  • F20944 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found