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RAFL06-75-A03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03544)

full reading [+] show sequence

Nucleotide sequence: RAFL06-75-A03 - full reading 
TACAAGACTG ATGTTGACAA CAAGAAGGTC TTCTATTCAG ATCTCAATGG 
TTTCCAAATG AGCAGGAGAG AAACTTATGA TAAGATCCCT CTTCAAGGAA 
ACTACTACCC AATGCCATCT CTCGCATTTA TCCAAGGATC CAATGGTCAG 
AGATTCTCCG TGCACTCTCG TCAATCTCTC GGTGTTGCAA GCCTCAAAGA 
GGGTTGGTTG GAGATTATGC TGGACAGACG GTTGGTTCGT GATGACGGAC 
GGGGTCTAGG GCAAGGTGTG ATGGATAACC GCGCAATGAC CGTGGTATTT 
CACCTTCTTG CGGAATCTAA CATTTCTCAA GCAGACCCTG CTTCCAACAC 
TAACCCGAGG AACCCTTCGC TTCTCTCTCA CCTCATAGGT GCTCACTTAA 
ACTACCCCAT AAACACATTC ATTGCCAAGA AACCGCAAGA CATATCTGTG 
CGTGTTCCAC AATACGGTTC CTTTGCTCCT TTAGCCAAAC CGTTACCATG 
TGACCTCCAC ATTGTAAATT TCAAGGTTCC TCGTCCATCC AAATACTCTC 
AGCAATTGGA AGAAGACAAG CCAAGGTTCG CTCTTATCCT CAATAGACGA 
GCTTGGGATT CAGCTTATTG CCATAAAGGA AGACAAGTAA ACTGCACAAG 
CATGGCTAAT GAACCAGTAA ACTTTTCCGA CATGTTCAAA GATCTTGCAG 
CTTCAAAGGT AAAACCAACT TCACTGAATC TCTTGCAAGA AGATATGGAG 
ATTCTTGGGT ACGATGACCA AGAGCTACCT CGAGATAGTT CACAGCCACG 
GGAAGGACGT GTCTCGATCT CTCCCATGGA AATACGAGCT TATAAGCTTG 
AACTGCGACC TCACAAGTGA AATACACACA CTTAAGACTG AACGTTGACT 
ATTTATTGGC TGGTATGGCC TCAAACGATC GTTGACTATA AGAGGTTGGG 
CTCAGAATCG GCTTCTTCTT GTTCACAGAA GCTGTGCCGG GAACATGAAC 
TGTCAAAAAG AGAGAGTAGA AGCTGGAGCA TCTCTGTGTC CATGTAAAAC 
TACTGTAAGG CATTAGTTTT TTTTGGCCGG TTCTTTTTGA GACAAGTTAT 
ATTAATTAGT TTTACCATTT TGCCTGGGAT TATTATGTTG TGTGTATATA 
AACTATATGT TATACACATT CGATTGAATT GGAGTGCAAA AGATATGGTC 
CT

Gene models with high sequence identity

  1. AT5G14950.1 [+] show detail - golgi alpha-mannosidase II
    E-value: 0; Score: 99.92

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 2.4e-46
superfamily Glycoside hydrolase-type carbohydrate-binding 1.6e-64
HMMPanther MANNOSIDASE ALPHA CLASS 2A 4.1e-133
HMMPanther ALPHA-MANNOSIDASE 4.1e-133
HMMPfam Glycosyl hydrolases 38, C-terminal 9.2e-48

See the detailed result >

AT5G14950.1

Model type
Protein coding
Short Description
golgi alpha-mannosidase II
Curator Summary
Encodes a golgi alpha-mannosidase, an enzyme responsible for the formation of major complex-type N-glycans.
Computational Description
golgi alpha-mannosidase II (GMII); CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013), Glycoside hydrolase/deacetylase, beta/alpha-barrel (InterPro:IPR011330), Glycoside hydrolase, family 38, central domain (InterPro:IPR015341), Glycoside hydrolase, family 38, core (InterPro:IPR000602), Glycosyl hydrolases 38, C-terminal (InterPro:IPR011682); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family 38 protein (TAIR:AT5G66150.1); Has 2033 Blast hits to 1987 proteins in 497 species: Archae - 20; Bacteria - 870; Metazoa - 708; Fungi - 131; Plants - 147; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-75-A03 introduced

  • F10901 - rosette leaf::abnormal / cauline leaf::decreased size / stem::present in fewer numbers in organism / stem internode::decreased length

Mutant lines with disrupted or induced

2 mutant lines found