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  3. RAFL06-75-B10

RAFL06-75-B10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03546)

full reading [+] show sequence

Nucleotide sequence: RAFL06-75-B10 - full reading 
ATTTTTCCTC GAAATATCTA ATCCACAGAT AGATAGAACA CTCTGTGAGC 
TTTATCCGCT TCCAATGGCG TCTTCCGCCG CTTCTCCTTC CTTATCTCTA 
CTCTCATTCA CCTCGAAGCC ACCTTATCCC TCCGGCTCTC AGCGGCTATT 
TGCGTCATTC AGAACGGACG GTCTTTTCGC GCCTTTAACA CTGAAATCCC 
GACGCGGCCG TGGTATAGTC GTTAAAGTAG ATGACGTCGA TGCTGATGGA 
GGTGGAGCGG ACGAGTATGA TATGGATGAT GAGGAGGTAG AGGAAGTTGA 
CAACAAGAAG GACTATGATG TCGAGTATGA CCCCTTGGCC GCCGCGATAG 
CCGCTGCAGG CGGTGGTGGT GATGGAGATA TCGCTTTTGT TCAGAGTAAG 
AGTTTTATAT CGACACAAGG ATGGGATTCG GATATGGTGG TTGATTATCG 
GATAAACGAA GATGAGTTTC ATAAACTCAG CTTAATGGAC TGTGATTTCT 
TTATCAGAAA ACCTCCTGAT CCAGATAATG ATGTTTATGA TTTCAGAGAG 
ATGTATGTTA CTCCTCCGGA TACAGATATT TACTCAATTC CGAGAGTTCT 
TGCACCGATG CCTCAAAAGT ATATTCGATG TGCAATGAGT GACTATGGAT 
GTTACAATGT CACTGAACCA CCTATTGATG CCCCCAGAGA TCCACTGTAC 
AAATCTGAGA GGGAGATATC CAAGGTTTTC TTGACAAAAC ATTACCGGAA 
CAGAAGGACA AACGATCCAG AATTTGTGCT AGATCTTGAA GAGATATATG 
TTATTGATTC CAAGACAAAG TCAATCACCA GAGCCAGAGT TCTGGTGACA 
GTTCCGGGAG GAAGAAAAAG GGATAGGAAG GATGACTTGC TTGTGATACG 
AGATAATGGA ACCTCCTTTA AGATCATACA CGTGGGTGAA AGAGATGACC 
CAACAACGGT AATAGAAAGA GAAGAGTGGA CCAAGACTAG AGAAGACATG 
GAGAAACATC TCAGGAAGCT ACGAGACTTC AGTGTCTCAA ATTGGTTCTA 
GAAGAACTCG AGAGACACCA AACGACAAGT CAGCATAACT TTCTTCCTGA 
GATGGAAAAC GAGAGCAGAT GATCTAAATC GATGATATGG TGGAGGGTAT 
ACAATTTTGG TGACCTCAGG TACTGCACTA GCAGCAGAGA TGGATGTGTT 
ATTAGATGAA TATGGGCCTC TAGAAAAAAG TGTGTAGATG CAATAGTTTG 
ATGGACTAAC ATTCAATGAC TAGAGAAGCT AGCTTATTTG CAAGTTTTGA 
GGTGTTTAAT TCAAGTTTTC AATTGATGAT T

Gene models with high sequence identity

  1. AT1G21600.1 [+] show detail - plastid transcriptionally active 6
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT1G21600.1

Model type
Protein coding
Short Description
plastid transcriptionally active 6
Curator Summary
Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.
Computational Description
plastid transcriptionally active 6 (PTAC6); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 36 Blast hits to 36 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-75-B10 introduced

  • F02034 - Specific phenotypes were NOT observed.
  • F05404 - Specific phenotypes were NOT observed.
  • F16609 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found