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  3. RAFL06-75-E07

RAFL06-75-E07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03555)

full reading [+] show sequence

Nucleotide sequence: RAFL06-75-E07 - full reading 
TCTGCTCCGT CAAGCTGAGG AGGATAAAAA CCCTAGGGTG AGTGAGACAG 
AGAGAAGCGA AAATGGTGCA GCGCCTTGTT TACCGATCAC GACACAGTTA 
CGCCACCAAA TCCAACCAGC ACAGGATCGT CAAAACTCCA GGAGGTAAAT 
TGACGTACCA GACCACTAAG AAGAGAGCTA GTGGACCTAA ATGTCCCGTT 
ACCGGCAAGC GTATTCAGGG TATTCCTCAC TTGAGGCCAA CTGAGTACAA 
GAGGTCACGT TTATCAAGAA ACAGGAGGAC CGTGAACCGT GCTTATGGTG 
GGGTTTTGTC TGGTTCTGCT GTTAGGGAAA GAATCATTCG TGCCTTCCTT 
GTGGAGGAGC AAAAGATTGT GAAGAAGGTT TTGAAGCTTC AGAAGGCAAA 
GGAAAAGGTT GCTCCCAAGT GATCTAGACC CTATTAGTTT TTATGTTTTA 
TGGCTCTGTT CTAGCGATAG TACTGGTTGC AGAGAAAAAC ATTGTGTACT 
CATCAAAAAA TTTAAGCTTT TTTGTATTGG TTTTGGACC

Gene models with high sequence identity

  1. AT1G69620.1 [+] show detail - ribosomal protein L34
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Ribosomal protein L34e 5.6e-30
FPrintScan Ribosomal protein L34e 5.6e-30
FPrintScan Ribosomal protein L34e 5.6e-30
FPrintScan Ribosomal protein L34e 5.6e-30
PatternScan Ribosomal protein L34e, conserved site 0
HMMPanther Ribosomal protein L34e 1.7e-47
HMMPfam Ribosomal protein L34e 3.8e-35

See the detailed result >

AT1G69620.1

Model type
Protein coding
Short Description
ribosomal protein L34
Curator Summary
putative 60S ribosomal protein L34
Computational Description
ribosomal protein L34 (RPL34); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane, large ribosomal subunit, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e, conserved site (InterPro:IPR018065), Ribosomal protein L34e (InterPro:IPR008195); BEST Arabidopsis thaliana protein match is: Ribosomal protein L34e superfamily protein (TAIR:AT1G26880.1); Has 951 Blast hits to 951 proteins in 317 species: Archae - 65; Bacteria - 0; Metazoa - 298; Fungi - 143; Plants - 198; Viruses - 0; Other Eukaryotes - 247 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-75-E07 introduced

  • F06229 - Specific phenotypes were NOT observed.
  • F23701 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found