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RAFL06-75-K14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03572)

full reading [+] show sequence

Nucleotide sequence: RAFL06-75-K14 - full reading 
ACTTAAACGT GTCGTGTTAT TTGCGTGACT TGAAAAAAGA AGTGAGATAA 
TTTTGAAAAC AATTTTTTAA TAATAATGCA AAACAGATCA ATCTCGCAAG 
TCGCAACGAT GGCGACGAGC TCTTCCACCG AGAAACTGCC ACGTGTCCTC 
ATCGTCAAAC GTCCCGACGC CATGGCTGTG TTAGGCGACG GATTCGTCGC 
CTCCACCAAG TTCGAGATCC TCAAAGCCTT CGAGTCTCCG CTTCCTCTTC 
CTGAATTCTT GGCCTATCAC TCTGACTCCA TCTCCGCCAT TATAGCCCCT 
GTAGCTGCTC CGGTCACAGC CGATCTGATT CGCATCCTCC CTAATCTTCG 
CTTGGTTGTT ACTACCAGCG CCGGCGTTGA CCATGTTGAC TTAGTTGAGT 
GTCGTCGTCG AGGCATCTCC GTCGCCAACG CTGGCTCAAG CTTCTCGGAA 
GATGTCGCAG ATACTGCCGT CGGTTTACTC ATCGACGTCT TCCGCCGCAT 
CTCCGCCGCC AATCGGTTCG TTAAGCAACG GTTTTGGCCA CTCAAAGGCG 
ATTATCCTCT CGGTTCCAAG GTTTGCAACA TAACTTGTGA AAAAATCAAA 
TTAGCAACAA AAATGATTGT TAATGGTTCC CTCTAATTTG CAGTTGGGGA 
GAAAGCGAAT CGGAATCGTG GGACTAGGAA GCATTGGCTC GAAAGTAGCG 
ACAAGGCTCG ACGCCTTTGG TTGCCAAATT TCATATAGCT CAAGAAACAG 
AAAACCATAT GATGTTCCAT ATCACTATTA CATGGATATA GAGGAGATGG 
CAGCTAATAG TGATGCACTC ATAATCTGTT GTGAATTGAA TGAGAAGACA 
TTGCGTTTGA TTAATAAAGA TGTTCTTTCT GCTCTGGGAA AGCGAGGAGT 
GATCGTTAAC GTGGCTCGTG GGGCTATAAT CGATGAGGAA GAAATGGTGA 
GATGTTTGAG AGAAGGTGAG ATTGGTGGTG CTGGTTTGGA TGTTTTTGAA 
GATGAGCCTA ATGTTCCGAA GGAGCTTTTT GAATTGGATA ATGTTGTTTT 
CTCTCCACAT AGTGCTTTTA TGACATTGGA AGGTCTT

Gene models with high sequence identity

  1. AT2G45630.1 [+] show detail - D-isomer specific 2-hydroxyacid dehydrogenase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D NAD(P)-binding domain 3.4e-19
Gene3D NAD(P)-binding domain 3e-40
superfamily Formate/glycerate dehydrogenase catalytic dom 7.6e-26
superfamily NAD(P)-binding domain 1.1e-41
HMMPanther GLYCERATE DEHYDROGENASE 1.5e-100
HMMPanther 2-HYDROXYACID DEHYDROGENASE 1.5e-100
HMMPanther GLYCERATE DEHYDROGENASE 5.4e-94
HMMPanther 2-HYDROXYACID DEHYDROGENASE 5.4e-94
HMMPfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 2.1e-16
HMMPfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 6.1e-45

See the detailed result >

AT2G45630.1

Model type
Protein coding
Short Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein
Computational Description
D-isomer specific 2-hydroxyacid dehydrogenase family protein; FUNCTIONS IN: NAD or NADH binding, binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, catalytic activity; INVOLVED IN: metabolic process; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain (InterPro:IPR006139), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: D-isomer specific 2-hydroxyacid dehydrogenase family protein (TAIR:AT1G12550.1); Has 6623 Blast hits to 6621 proteins in 1548 species: Archae - 250; Bacteria - 4438; Metazoa - 370; Fungi - 171; Plants - 170; Viruses - 0; Other Eukaryotes - 1224 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-75-K14 introduced

  • F00544 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found