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  3. RAFL06-76-A03

RAFL06-76-A03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03589)

full reading [+] show sequence

Nucleotide sequence: RAFL06-76-A03 - full reading 
ATCACAAAAC TTGCAAGTAT CATTCACAGG AGAGGGAAGG GAGAGCTCAT 
CATACGAAAT GAGGTCAATC ACAGCTTTGT TTTTCCTTTT CTGTTTCCTT 
GCTCCTTCTG CTTTGGCGCA GCTCCGAACT GGGTTCTACA GCCGCTCATG 
CCCCCGTGCC GAATCTATCG TGGCTAGTGT TGTTGCCAAC CGTTTCAGAA 
GTGACAAGTC CATTACTGCA GCATTTCTTC GTATGCAGTT TCATGATTGC 
TTTGTCAGGG GTTGTGATGC TTCCCTCTTG ATCGACCCAA GACCTGGAAG 
GCCATCAGAG AAAAGCACTG GACCAAATGC AAGCGTGAGA GGCTACGAGA 
TCATTGATGA GGCTAAGAGA CAGCTCGAGG CTGCATGTCC CCGAACTGTC 
TCATGCGCAG ACATTGTAAC TCTTGCCACA AGAGACTCGG TCGCATTAGC 
TGGTGGTCCA AGGTTCTCAG TACCAACAGG AAGACGTGAT GGATTAAGGT 
CAAACCCCAA TGATGTGAAC TTACCCGGAC CAACAATTCC GGTTAGCGCA 
TCTATCCAAT TGTTTGCAGC TCAAGGTATG AATACCAACG ATATGGTTAC 
ACTTATTGGT GGTGGCCACA GCGTCGGTGT TGCACATTGC AGTCTCTTCC 
AGGACAGGCT TTCCGACCGT GCAATGGAAC CCTCATTGAA GTCTAGCTTG 
AGGAGGAAAT GCAGTTCCCC TAACGACCCA ACAACGTTTT TGGACCAAAA 
GACTTCATTT ACTGTGGATA ACGCAATCTA TGGAGAGATC CGAAGACAAA 
GAGGAATTCT AAGAATTGAT CAAAACTTGG GTCTTGATAG ATCAACCAGT 
GGGATTGTGT CTGGTTATGC ATCAAGCAAT ACACTCTTCA GAAAGAGATT 
TGCCGAAGCA TTGGTGAAAA TGGGTACCAT TAAGGTTCTT ACCGGACGTT 
CTGGAGAGAT CAGGAGAAAC TGCAGAGTCT TCAACAACTG AGGACGTTGA 
TTCTTGCACA CATTCTTTAC AATTATTCAC GGAGAGATCC AAAGACTGAG 
CGGAATCCTA CGTTTTTTCT TTTCTTTGCT TTTTTTCTTA CAAATCAAAT 
CGGAAAGTGT GTTTGTTCCG GTATCATGTT TTATTTTTCC CTAAAAATTG 
ATTCGCGTGT TTCATTTTCA TGAACTATAT ATTGTTCTAA T

Gene models with high sequence identity

  1. AT4G26010.1 [+] show detail - Peroxidase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Plant peroxidase 5.1e-45
FPrintScan Plant peroxidase 5.1e-45
FPrintScan Plant peroxidase 5.1e-45
FPrintScan Plant peroxidase 5.1e-45
FPrintScan Plant peroxidase 5.1e-45
FPrintScan Plant peroxidase 5.1e-45
FPrintScan Plant peroxidase 5.1e-45
FPrintScan Plant peroxidase 5.1e-45
FPrintScan Plant peroxidase 5.1e-45
FPrintScan Haem peroxidase, plant/fungal/bacterial 5.2e-23
FPrintScan Haem peroxidase, plant/fungal/bacterial 5.2e-23
FPrintScan Haem peroxidase, plant/fungal/bacterial 5.2e-23
FPrintScan Haem peroxidase, plant/fungal/bacterial 5.2e-23
FPrintScan Haem peroxidase, plant/fungal/bacterial 5.2e-23
ProfileScan Haem peroxidase, plant/fungal/bacterial 73.378
HMMPfam Haem peroxidase, plant/fungal/bacterial 9.8e-67
Gene3D no description 1.9e-54
superfamily Haem peroxidase 4.9e-98
PatternScan Peroxidase, active site 0

See the detailed result >

AT4G26010.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT1G34510.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-76-A03 introduced

  • F06818 - stem::abnormal / seed::present in fewer numbers in organism / fruit::decreased length / stem::present in fewer numbers in organism
  • F07720 - seed::increased size / seed::increased length
  • F09428 - seed::increased size
  • F21950 - Specific phenotypes were NOT observed.
  • F23621 - seed::increased width
  • F24313 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found