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  3. RAFL06-76-J08

RAFL06-76-J08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03631)

full reading [+] show sequence

Nucleotide sequence: RAFL06-76-J08 - full reading 
GCACAGCCCA AAAAGCTTGA CCTAACGGCT ATGTTTTCTT TACTTTCACC 
ATAAATAAGC ACCTCTTGAG GTTGCAAACA CACACACACA CACACACTCA 
CTTCAAAAGA GTTAGTAAGA AGTTGGGGTT TGATTAACGT TTTGCATCGG 
AGATGGGTTT GGTCATGAGG TTTGATCTTT ACCTTATGTT TGTGATGTTG 
ATGGGTTTAG GGTTTACGAT ATCAAATGGA TACAAGTCTA TGTTGGTGGG 
AAAGATGGTT GGGTCCCGAC TCCTTCCGAA GATTATTCTC ATTGGTCTCA 
CCGAAACCGG TTTCAAGTCA ACGACACTGT TCATTTTAAG TACGCCAAGG 
GAAAAGATTC AGTGTTGGAG GTGACTGAAC AAGAGTACAA CACATGCAAC 
ACGACACACC CCCTGACTTC CCTCTCAGAC GGAGACTCTC TCTTCCTACT 
TAGCCACTCA GGTTCCTACT TTTTCATTAG TGGCAACTCT CAAAACTGTC 
TTAAAGGTCA GAAGCTAGCC GTCAAGGTCT TGTCCACCGT CCACCACAGC 
CACTCTCCTC GTCATACCTC TCCCTCCCCG TCTCCGGTCC ATCAGGAGTT 
GTCTTCGCCG GGGCCTTCTC CAGGAGTGGA ACCATCATCT GATTCAAACT 
CTCGTGTTCC AGCTCCAGGA CCGGCTACAG CTCCCAATTC GGCCGGTTTG 
GTTGGTCCGG GGATGGTGGT TCTTGTGATT ATGATAAGTT CTCTGTTTTG 
AGGGGTTTAT ATATTGTCGC TAGTCATTAA ATTTGTGAGG GTATTAATTA 
CTCTACCATT GAGTTTCATA TTTATGTGCC TTTTTATTTG TATGTTTGAA 
GCATCTTGTA ACCCATTTTT AATGTTTCCG CTGTCTCGTT TTTGTTCTTA 
CTAAAGAAAA TATTTAAGC

Gene models with high sequence identity

  1. AT4G28365.1 [+] show detail - early nodulin-like protein 3
    E-value: 0; Score: 99.78

 

InterPro Scan Digest

Program Description E-value
Gene3D Cupredoxin 1.4e-27
superfamily Cupredoxin 1.6e-30
HMMPfam Plastocyanin-like 8.2e-22
BlastProDom Plastocyanin-like 1e-19

See the detailed result >

AT4G28365.1

Model type
Protein coding
Short Description
early nodulin-like protein 3
Computational Description
early nodulin-like protein 3 (ENODL3); FUNCTIONS IN: electron carrier activity, copper ion binding; LOCATED IN: anchored to membrane; CONTAINS InterPro DOMAIN/s: Plastocyanin-like (InterPro:IPR003245), Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: early nodulin-like protein 4 (TAIR:AT4G32490.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-76-J08 introduced

  • F21030 - seed::increased length
  • F29731 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found