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  3. RAFL06-76-L04

RAFL06-76-L04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03641)

full reading [+] show sequence

Nucleotide sequence: RAFL06-76-L04 - full reading 
AGACGAGAGT CCTCAAATCC ATTTTCTCTC TCTATCTCTC TTTATCCCTT 
CGTCTTCTTC CTCGGCGACA CCACTTGCAG GCGCTAACTC GACGAAGAAG 
GAAAAGATTT TCCGGTGTTA GTCACATCGA CGCAGAAGGA ACAGAGAAGA 
AGACGAGAGT CAGCTTCATT ATCAACTTTA GTTCTTCGAC GTCTACGCAC 
ATGAACCGAC GGCGACTTTT GGTATCGGCG ACACTGCTCT CGTATTTGCT 
CTACGGCATG GCTCTCGTCT CCGTTGAAGC CTCCGGTGGT GAAAAGCTTA 
GAGATAATCT GGATTTGACT AAAACGACGA CGTCGTCACC GAGCATATCA 
CATCGGAAAA TGCTGCTTCT CTCTCCTGGT ACTGAACTTC TCTCTCTGTG 
GTCTCTCTGT GAATGCACAA CTTCCTGATG CGTTTCGTCC TTTTTGTTTT 
CACAGCGTCG TCAGTCTTTT GCACGTCTGT GTTTTCTTGC CCCTGCTTTT 
GTTTCTTTGT TCGTTATACT TTTGTGGACC CACTTAAGAG CCTCATGACT 
TATCTTAAGA GTAAAAACAA ATAACATCAT CTTAAGATTG TGTGC

Gene models with high sequence identity

  1. AT4G24972.1 [+] show detail - tapetum determinant 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT4G24972.1

Model type
Protein coding
Short Description
tapetum determinant 1
Curator Summary
Encodes a novel small protein which is similar to proteins of unknown function from other plant species. TPD1 is involved in cell specification during anther and pollen development. Identified in a screen for male steriles. Mutants lack tapetal cells and have an increased number of microsporocytes. Expressed in flower buds, leaves and young seedlings. In anthers, TPD1 is expressed throughout pollen development in parietal cells and sporocytes. Physically interacts with the LRR kinase EMS1 and that interaction results in phosphorylation of TPD1.
Computational Description
TAPETUM DETERMINANT 1 (TPD1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: cell fate determination, anther development; LOCATED IN: endomembrane system; EXPRESSED IN: microsporocyte, floral meristem, flower, anther, leaf; EXPRESSED DURING: seedling growth; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G32583.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-76-L04 introduced

  • F05531 - Specific phenotypes were NOT observed.
  • F07313 - seed::increased size
  • F13211 - seed::increased size
  • F17505 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found