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RAFL06-77-K06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03683)

full reading [+] show sequence

Nucleotide sequence: RAFL06-77-K06 - full reading 
AAAAACATAT ATACATCGAA AACAACTAAG TATAAACAAT AGTCATGGCT 
AAGTCTGCTA CCATCGTTAC TCTTTTCTTC GCTGCTCTTG TTTTCTTTGC 
TGCTCTTGAA GCACCGATGG TGGTGGAAGC ACAGAAGTTG TGCGAGAGGC 
CAAGTGGGAC ATGGTCCGGA GTTTGCGGAA ACAGTAACGC GTGCAAGAAT 
CAGTGCATTA ACCTTGAGAA AGCACGACAT GGATCTTGCA ACTATGTCTT 
CCCAGCTCAC AAATGTATCT GCTACTTCCC ATGTTAATCT ACCAAGAGCT 
CTTAATGCTT AATTATAAAG TGTGTATTTC TATTAAATAA GTATGTGTCA 
CTCTATGAGA GGTCTTATGA CATGTACCAG ATATGTTATG TTGCTTTGTT 
TTAATAAGAT AAACTTTTAC GTACC

Gene models with high sequence identity

  1. AT1G75830.1 [+] show detail - low-molecular-weight cysteine-rich 67
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Gamma thionin 0
superfamily Scorpion toxin-like 5.8e-15
Gene3D no description 7.3e-18
HMMPfam Gamma thionin 1.9e-14
HMMSmart Knottin 1.2e-11

See the detailed result >

AT1G75830.1

Model type
Protein coding
Short Description
low-molecular-weight cysteine-rich 67
Curator Summary
Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational Description
low-molecular-weight cysteine-rich 67 (LCR67); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response; LOCATED IN: endomembrane system, cell wall; CONTAINS InterPro DOMAIN/s: Gamma thionin (InterPro:IPR008176), Knottin (InterPro:IPR003614); BEST Arabidopsis thaliana protein match is: plant defensin 1.3 (TAIR:AT2G26010.1); Has 172 Blast hits to 172 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-77-K06 introduced

  • F05918 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found