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  3. RAFL06-77-M12

RAFL06-77-M12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03692)

full reading [+] show sequence

Nucleotide sequence: RAFL06-77-M12 - full reading 
AATCAGTCTA ACGATGGGTT CAAAGAATAA GAAGCAAAGG AAAGGAGAGA 
GCATTGAAGA AGCTAAAGGA TCCAGTGGAG TCGCAGAGGA AGGAAACGAA 
ATGATTAAGG ATCCAAGGTT TTCGTCGGCG CACACGGACC CTAAATTCCG 
TAGGATGCGG AGGCGTGACT CCAAAGTCGC CATTGACTCC AGATTCCAGC 
CTATGTTCAA TGATAAGCGA TTTGCCACTG GTTCTGCTCC TGTCGATAAG 
CGTGGCAAGC GTAGAACAGG AGGCACTGGC AAAGATTCGC TTCGAGAGTT 
TTATCGAATT GAAGATGAAG GTAAGCAGAA AACTGAGGAG GAATCTGGGG 
ATGAGAGCGG GAGTGAGACA GAGATAAATG ATTTGAAATC CGAAAAATCT 
AGCCATGTAG AATCTGAGGA AGAGAGTGAG AGTGAGCTAA AGGTTGCTTC 
TTTGGATGAT GAATCTGATG AGAAAGCAGA CTCTGAAGAG TTATCCTCGC 
AGGAGGAGGA AGAAGAAGAG GATGATACAG ATGAGGACGA TGAAGCTATG 
TATGAAGATG AGGGACCAGA AATTCCGGAA GAGAACATAC CGCTTATCCA 
AGAAGAAACT CATAGACTGG CTATCGTTAA CATGGATTGG AGACATGTCT 
CTGCTAAAGA CTTGTACGTA GTGTTGAATT CGTTTCTGCC AAAAGATGGG 
CGCATTTTGT CAGTTGCGGT CTATCCATCT GAGTTCGGAC TTGAGCGAAT 
GAAAGAGGAG GAAATCCATG GGCCGGTAAT TGATGGCGAC AAAAAGAATG 
ACGCTAGTGA TGATGAAGAT GAAGAAGAGG AGGAAGATGA GGATGTCATC 
AACCAGAAGC TACGTGCCTA TGAAATAAGT AGATTAAAAT TACTTGTACA 
AATCATGTGA TGGAATTGAG TTTGAGAGAT CATCAAACAA GCTCGACCTA 
AGATTTATTC CGGATTCCAT GGAATTCAAA CATCCACCTC GTGATATTGC 
ATCTGAGGCA CCAGCTGGTT ATGAAGGTTT AGATTTTCAG AGCCGAGCTC 
TGCAGATGAG CAAAGTTAAT CTTTCTTGGG ATGAAGATGA ACCGCACCGG 
ATTAAGACCT TAAATCAGAA ATTCAATCCT GAACAGTTGG CAAATCTTGA 
GATGAAGGAG TTTTTAGCTT CTGATGAGAG TGATTCTGAT GAGGAAGACG 
ACTTGGGCAA TGAAGTTATT AACCAGAGTA AAAAAAAAGG ACAAGAAGAA 
AGATAAGTAC CGAGCTTTAA TAGAAGCCGA AGATGTTGAT TCTGATAAAG 
ACCTGGAGGA GGAGAATGAC CAGGATATGG AGGTAACATT CAATACCGGT 
TTAGAAGATC TTAGCAAAGA GATTCTTAAA AAGAAAGACA ACCAGTCAGA 
ATCGGTGTGG GAAACATATC TAAGGCAGAG ACGCGAGAAG AAGAGAGCCA 
GGAAGAATAA ACAGAAGGAT GATGATTCTT CTCCGGATGA TGACGACGAT 
TATAACATTG ATAGAAAGGC AGTGAAAGAT GATGGAGATG ACGATTTCTT 
TATGGAGGAA CCTCCTCTTA AGAAGAAGAA GAAAGAAGGA AAGACAAAGA 
AGGAGGAAGT AGCAGCGGAA GAAAAAAGTA GAGCGGAGCT TGAGTTGTTA 
CTAGCTGATG AGAATGCAGG AGATGGTAAT GGTCTGAAAG GGTATAATAT 
TAAACGGAAA GCTAAAAAAG GAAAGACTGA TATTTCGGAA GACAAGATAC 
CTGCTGCTGA ACTTGATGAT CCGAGATTCT CAGCTCTATT CTCGTCTCCT 
TACTATGCCC TAGACCCTAC GGATCCACAG TTTAAAAGGA GTGCGACTTA 
TGCAAGGCAA TTAGCTTTGA AGCAAAAGGA AGATCCAAAA GGCCACGAGG 
ATGTGAAAGC GCCAAAGGAG AAACAGGAGT TGAATTCAGA TGGTAACTTG 
GGGTCTAAGA AGGAGAGACA CGAACTGACT TCTACTGTCA AATCTTTGAA 
GATGAAGATG ATGAACAAGG ATTCTGAGAA GAAAAAAGCG GGAAATCCAG 
CGTCTTCATC GACTTTGGCT CAGCGAATTA AGAAGAAAGC CAAAGATTTA 
TCCAAGAAAT AATAATGTCT TTGTTTCCTT CTTCAAATCA ATTTTGTTTT 
AAATTTAAAA TTCTGAATTA ATAACAATTT CAACCTATAT TGTACCCTTT 
CAAATCTGTT TATGTTTCAT TTTGAGC

Gene models with high sequence identity

  1. AT3G01160.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cy...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam NUC153 1.1e-09
Coil coiled-coil 0
HMMPanther UNCHARACTERIZED 1.5e-36
HMMPanther UNCHARACTERIZED 5.6e-95
HMMPanther UNCHARACTERIZED 1.7e-37

See the detailed result >

AT3G01160.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUC153 (InterPro:IPR012580); Has 36638 Blast hits to 21323 proteins in 1057 species: Archae - 109; Bacteria - 2369; Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses - 489; Other Eukaryotes - 13360 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-77-M12 introduced

  • F02635 - whole plant::decreased height / sporophyte vegetative stage::decreased speed / flower::abnormal / whole plant::decreased height / sporophyte vegetative stage::decreased speed / flower::abnormal

Mutant lines with disrupted or induced

1 mutant line founds