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RAFL06-78-C05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03715)

full reading [+] show sequence

Nucleotide sequence: RAFL06-78-C05 - full reading 
AGCAGTCTTA TGGCGGCCAT AGTACTGATC AGATCTATCG TCAGAAACTT 
TAAACGGCCA GCCACCGCAG CCTCAGCCGC TTACTCGACA GGTGGTGGTG 
GCGGCGGTTG TACTTGTACG AGTAAAAAGC TAGAAGGCAA AGTAGCTCTC 
ATAACTGGTG GTGCTAGCGG GCTCGGTAAG GCCACGGCCA GCGAGTTTCT 
CCGCCATGGT GCCCGAGTCG TGATCGCCGA CTTAGACGCG GAAACCGGGA 
CAAAAACCGC TAAAGAACTA GGCTCGGAGG CAGAGTTTGT GCGGTGTGAT 
GTCACGGTGG AGGCTGATAT CGCTGGGACG GTGGAAATAA CGGTGGAGCG 
GTATGGGAAG CTAGACGTGA TGTACAATAA CGCTGGGATT GTTGGACCTA 
TGACTCCAGC GAGCATATCG CAGCTTGATA TGACAGAATT CGAGAGAGTA 
ATGAGGATTA ATGTTTTTGG TGTTGTCTCC GGCATCAAAC ACGCCGCTAA 
GTTTATGATT CCGGCTAGGT CTGGATGCAT TTTGTGCACA TCAAGCGTTG 
CAGGCGTGAC TGGAGGGTTG GCTCCACATT CATACACAAT CTCAAAGTTC 
ACAACTCCCG GAATAGTCAA GTCGGCAGCA AGCGAGCTCT GCGAACACGG 
CGTGCGTATA AACTGTATCT CACCGGGTAC GGTGGCTACA CCGCTCACTC 
TCAGTTACCT TCAGAAAGTG TTTCCGAAGG TATCGGAGGA GAAGCTACGC 
GAAACAGTGA AAGGAATGGG TGAGTTAAAA GGAGCTGAGT GTGAAGAAGC 
TGACGTGGCT AAGGCTGCTT TGTATTTGGC TTCCAACGAC GGTAAATACG 
TTACTGGCCA TAACTTGGTC GTGGATGGTG GCATGACTGC TTTCAAAATA 
GCTGGTTTTC CTTTTCCTTC GGATTCATGA TCAATCATTT TGTATCGTCT 
ATAAATAACT TTGTACTGTA TTCAAGATTT TATATCAAAG TTGGATCTT

Gene models with high sequence identity

  1. AT3G26770.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
    E-value: 0; Score: 99.60

 

InterPro Scan Digest

Program Description E-value
superfamily NAD(P)-binding domain 1.3e-69
FPrintScan Glucose/ribitol dehydrogenase 1.7e-32
FPrintScan Glucose/ribitol dehydrogenase 1.7e-32
FPrintScan Glucose/ribitol dehydrogenase 1.7e-32
FPrintScan Glucose/ribitol dehydrogenase 1.7e-32
FPrintScan Glucose/ribitol dehydrogenase 1.7e-32
FPrintScan Glucose/ribitol dehydrogenase 1.7e-32
FPrintScan Short-chain dehydrogenase/reductase SDR 2.8e-05
FPrintScan Short-chain dehydrogenase/reductase SDR 2.8e-05
FPrintScan Short-chain dehydrogenase/reductase SDR 2.8e-05
HMMPanther SHORT CHAIN ALCOHOL DEHYDROGENASE 5.7e-141
HMMPanther Short-chain dehydrogenase/reductase SDR 5.7e-141
HMMPfam Short-chain dehydrogenase/reductase SDR 2.1e-29
Gene3D NAD(P)-binding domain 1.3e-64

See the detailed result >

AT3G26770.1

Model type
Protein coding
Short Description
NAD(P)-binding Rossmann-fold superfamily protein
Computational Description
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G26760.1); Has 124722 Blast hits to 124477 proteins in 3643 species: Archae - 1005; Bacteria - 80894; Metazoa - 6366; Fungi - 6864; Plants - 2737; Viruses - 9; Other Eukaryotes - 26847 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-78-C05 introduced

  • F09510 - cauline leaf::present in fewer numbers in organism / cauline leaf::epinastic / cauline leaf::abnormal / stem::abnormal

Mutant lines with disrupted or induced

2 mutant lines found