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  3. RAFL06-78-D02

RAFL06-78-D02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03718)

full reading [+] show sequence

Nucleotide sequence: RAFL06-78-D02 - full reading 
GACAGCGAAC AAGATCAAAA AGCTAGCTCT CTTCTTTTCT CATCAAACTT 
ATTTCTCTCT CGATCGCAAT ATATACGATT CCATAAATTC TCCCAAAAAC 
AAATTAAGAG ATAGAGGAGA GATCATGAGG TCACCGGTGC AACTCCAACA 
CGGCTCAGAC GCCACTAACG GTTTCCACAC GCTGCAGCCT CACGATCAGA 
CCGATGGTCC GATCAAGAGA GTGTGTCTCA CGCGCGGTAT GCATGTCCCT 
GAACACGTTG CGATGCACCA CACACACGAC GTTGGTCCGG ACCAGTGTTG 
CTCCTCGGTG GTGCAGATGA TCCACGCGCC GCCTGAGTCC GTGTGGGCTC 
TTGTGCGGCG TTTCGATAAT CCGAAGGTTT ACAAGAACTT CATCAGACAG 
TGCCGTATCG TCCAAGGCGA TGGACTACAC GTCGGCGATC TCCGGGAGGT 
CATGGTGGTC TCTGGACTCC CGGCGGTCTC GAGCACCGAG AGGCTCGAGA 
TCTTGGACGA GGAGCGTCAC GTGATAAGCT TTAGTGTCGT TGGTGGGGAC 
CACAGGCTCA AGAACTACCG ATCGGTGACG ACACTACACG CGTCGGACGA 
CGAAGGTACC GTGGTGGTGG AGTCTTACAT CGTTGATGTG CCGCCGGGAA 
ACACGGAGGA GGAAACTCTA AGCTTCGTTG ATACTATCGT CCGGTGCAAC 
CTTCAGTCTC TGGCTCGAAG TACCAACCGG CAATAATCTC ATCTTTCTTA 
TATAAATTGC AATTATGTAT CTAATTTTTT TTGTTGTTCT ATTTCTTTTA 
GATGTTCGAT CTTCTTTACA AGGAAGAAAA TTTCGAGTAC CTTTTCTTTC 
TTTTTAAATA GATATATCGG CTTAGAAAGA ATTGTAATTT AATGGGGATT 
TCTTTGGGAG ATTTATGTTG GAAATTTCGA AGTACTGTTG GGGGATTCAC 
AAAACTTTGG ATTTGGAGGG TGTTAGTACT GGTACATAAA ACATTTTAAG 
GTGAATCTGT TAAATGAATT AATCCATTTG TTGTTTTGTA CATGGTATCA 
TTCTTTGTGA CATTGTTTAA TTTCTTGTAC TCTTTTAAAT GTTACTCTTA 
ACCGTTTTTT TCTTTTGTGG TTTGTAAATG AATATTTGAT GCATCGGTAT 
TGTTAATGAT AGACTTATTA ATTTATTTCT TCATAGTATG TAACATT

Gene models with high sequence identity

  1. AT5G05440.1 [+] show detail - Polyketide cyclase/dehydrase and lipid transport superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Polyketide cyclase/dehydrase 2.8e-16
Gene3D no description 1.4e-05
superfamily Bet v1-like 2.3e-36

See the detailed result >

AT5G05440.1

Model type
Protein coding
Short Description
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Curator Summary
Encodes a member of the PYR (pyrabactin resistance )/PYL(PYR1-like)/RCAR (regulatory components of ABA receptor) family proteins with 14 members. PYR/PYL/RCAR family proteins function as abscisic acid sensors. Mediate ABA-dependent regulation of protein phosphatase 2Cs ABI1 and ABI2.
Computational Description
PYRABACTIN RESISTANCE 1-LIKE 5 (PYL5); CONTAINS InterPro DOMAIN/s: Polyketide cyclase/dehydrase (InterPro:IPR019587); BEST Arabidopsis thaliana protein match is: PYR1-like 6 (TAIR:AT2G40330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-78-D02 introduced

  • F18413 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found