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  3. RAFL06-78-H02

RAFL06-78-H02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03728)

full reading [+] show sequence

Nucleotide sequence: RAFL06-78-H02 - full reading
AAGATTCTTC ACATAGAGAA GTCACATGTT CCTTCTTCTT CTTCCTTCAT 
CATCCCCAAA CACACACAAA CTAAAAAAAA GGCAAAACCC TAGATCCAAG
ATCAGACCTA ATCTAATCGA AACTCATAGC TGAAAAATGA AGAGAGATCA
TCACCAATTC CAAGGTCGAT TGTCCAACCA CGGGACTTCT TCTTCATCAT
CATCAATCTC TAAAGATAAG ATGATGATGG TGAAAAAAGA AGAAGACGGT
GGAGGTAACA TGGACGACGA GCTTCTCGCT GTTTTAGGTT ACAAAGTTAG
GTCATCGGAG ATGGCGGAGG TTGCTTTGAA ACTCGAACAA TTAGAGACGA
TGATGAGTAA TGTTCAAGAA GATGGTTTAT CTCATCTCGC GACGGATACT
GTTCATTATA ATCCGTCGGA GCTTTATTCT TGGCTTGATA ATATGCTCTC
TGAGCTTAAT CCTCCTCCTC TTCCGGCGAG TTCTAACGGT TTAGATCCGG
TTCTTCCTTC GCCGGAGATT TGTGGTTTTC CGGCTTCGGA TTATGACCTT
AAAGTCATTC CCGGAAACGC GATTTATCAG TTTCCGGCGA TTGATTCTTC
GTCTTCGTCG AATAATCAGA ACAAGCGTTT GAAATCATGC TCGAGTCCTG
ATTCTATGGT TACATCGACT TCAACGGGTA CGCAGATTGG TGGAGTCATA
GGAACGACGG TGACGACAAC CACCACGACA ACGACGGCGG CGGGTGAGTC
AACTCGTTCT GATATCCTGG TTGACTCGCA AGAGAACGGT GTTCGTTTAG
TCCACGCGCT TATGGCTTGT GCAGAAGCAA TCCAGCAGAA CAATTTGACT
CTAGCGGAAG CTCTTGTGAA GCAAATCGGA TGCTTAGCTG TGTCTCAAGC
CGGAGCTATG AGAAAAGTGG CTACTTACTT CGCCGAAGCT TTAGCGCGGC
GGATCTACCG TCTCTCTCCG CCGCAGAATC AGATCGATCA TTGTCTCTCC
GATACTCTTC AGATGCACTT TTACGAGACT TGTCCTTATC TTAAATTCGC
TCACTTCACG GCGAACCAAG CGATTCTCGA AGCTTTTGAA GGTAAGAAGA
GAGTACACGT CATTGATTTC TCGATGAACC AAGGTCTTCA ATGGCCTGCA
CTTATGCAAG CTCTTGCGCT TCGAGAAGGA GGTCCTCCAA CTTTCCGGTT
AACCGGAATT GGTCCACCGG CGCCGGATAA TTCTGATCAT CTTCATGAAG
TTGGTTGTAA ATTAGCTCAG CTTGCGGAGG CGATTCACGT AGAATTCGAA
TACCGTGGAT TCGTTGCTAA CAGCTTAGCC GATCTCGATG CTTCGATGCT
TGAGCTTAGA CCGAGCGATA CGGAAGCTGT TGCGGTGAAC TCTGTTTTTG
AGCTACATAA GCTCTTAGGT CGTCCCGGTG GGATAGAGAA AGTTCTCGGC
GTTGTGAAAC AGATTAAACC GGTGATTTTC ACGGTGGTTG AGCAAGAATC
GAACCATAAC GGACCGGTTT TCTTAGACCG GTTTACTGAA TCGTTACATT
ATTATTCGAC TCTGTTTGAT TCGTTGGAAG GAGTTCCGAA TAGTCAAGAC
AAAGTCATGT CTGAAGTTTA CTTAGGGAAA CAGATTTGTA ATCTGGTGGC
TTGTGAAGGT CCTGACAGAG TCGAGAGACA CGAAACGTTG AGTCAATGGG
GAAACCGGTT TGGTTCGTCC GGTTTAGCGC CGGCACATCT TGGGTCTAAC
GCGTTTAAGC AAGCGAGTAT GCTTTTGTCT GTGTTTAATA GTGGCCAAGG
TTATCGTGTG GAGGAGAGTA ATGGATGTTT GATGTTGGGT TGGCACACTC
GTCCACTCAT TACCACCTCC GCTTGGAAAC TCTCGACGGC GGCGTACTGA
GTTTGACTCG AAGCATACGA CGGTGGTGGA GTCGAGTCGA GTGAATTTGA
GATTGAGATC AGTGGACCGG TGATGACATA TGTTCGGACC AAGACCTAAA
CCGAACTGAA TCGAACCGTT TTGCCTTTTG TTTATTTTAT TTATTTTCGT
TCACTTGTTT AAAATTCTTA TATATATCGT TTTGGTAGGT CATTTTTAAT
TTATGCCTTT TTGGGATCAA TTTTTAATAG GCTGAGTTTG TATTTATTAA
TAAATTATCT TTATGAATTT TAAACTAAAA CTATGTTTTA ATCTCATTTA
AAAAAAAATT AATATT

Gene models with high sequence identity

  1. AT2G01570.1 [+] show detail - GRAS family transcription factor family protein
    E-value: 0; Score: 99.91

 

InterPro Scan Digest

Program Description E-value
HMMPfam Transcription factor GRAS 5.6e-133
HMMPfam Transcriptional factor DELLA, N-terminal 2.2e-35
Coil coiled-coil 0
ProfileScan Transcription factor GRAS 65.245

See the detailed result >

AT2G01570.1

Model type
Protein coding
Short Description
GRAS family transcription factor family protein
Curator Summary
Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. The protein undergoes degradation in response to GA via the 26S proteasome. RGA1 binds to PIF3 and inhibits its DNA binding activity and thus affects the expression of PIF3 regulated genes. RGA may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Represses GA-induced vegetative growth and floral initiation. Rapidly degraded in response to GA. Involved in fruit and flower development.
Computational Description
REPRESSOR OF GA1-3 1 (RGA1); CONTAINS InterPro DOMAIN/s: Transcriptional factor DELLA, N-terminal (InterPro:IPR021914), Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor family protein (TAIR:AT1G14920.1); Has 2724 Blast hits to 2666 proteins in 317 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 4; Plants - 2709; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-78-H02 introduced

  • F13347 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

18 mutant lines found