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  3. RAFL06-78-I09

RAFL06-78-I09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03733)

full reading [+] show sequence

Nucleotide sequence: RAFL06-78-I09 - full reading 
ACCCAGTCTG GAGTCTGGCC ATTGGGATTA AACTAACTTC TCATTCTCAT 
TCCACCTTCT TCTTCTTTGT TCTTGTGTGC TACTAAAAAT CAAGAAAGCA 
CAAGGAGACA AATAAACCTA TCCATTTCAT TACCAAACAA GCCGTACATT 
CTCTAGTTAT GGCTTCTTCT TCTTCTTCTT CTTCAACTAC TTCAACCATC 
ACATCCAAAT TTATTGGGCT TATGCTTCTT CTCTCTCTTC AACTAGACTT 
ATTACTCGGA TCAGCTATTC ATCTTAAAAA CCAAACTTCA TTCAGACCCA 
ACAGGGAGAT TCAGAAGCTT AGAAGAGTGG AAGCATATCT CAGCAAAATC 
AACAAACCTT CCATCAAAAC AATCCACAGC CCAGACGGAG ATGTAATAGA 
ATGTGTACCG TCTCATTTAC AACCCGCATT TGATCATCCT CAGCTACAAG 
GCCAGAAACC ACTTGACTCA CCTTACAGGC CAAGTAAAGG AAATGAAACA 
ACATATGAGG AAAGTTTTAA TCAGTTATGG AGTATGTCCG GTGAAAGTTG 
TCCAATTGGG TCAATACCAA TTAGAAAAAC AACAAAGAAT GATGTTTTAA 
GGGCAAATTC AGTTCGACGG TTTGGTCGGA AATTAAGAAG ACCCATTAGA 
CGAGATTCAT CCGGAGGTGG TCACGAGCAT GCGGTGGTGT TTGTAAATGG 
AGAACAATAC TATGGAGCTA AAGCAAGCAT TAACGTGTGG GCGCCACGTG 
TCACTGATGC TTATGAGTTT AGTTTATCTC AGATTTGGCT CATCTCTGGA 
TCCTTTGGTC ATGACCTAAA CACCATTGAA GCTGGTTGGC AGGTTAGTCC 
TGAACTATAC GGAGATAATT ATCCAAGATT CTTCACATAT TGGACGACTG 
ATGCATACCA AGCAACTGGG TGCTACAATT TACTCTGCTC TGGATTCGTA 
CAAACCAACA ATAAAATTGC AATTGGTGCA GCGATTTCCC CGAGGTCCTC 
TTATAATGGA AGACAGTTTG ATATCGGTTT AATGATTTGG AAGGATCCAA 
AACATGGGCA CTGGTGGCTT GAACTAGGGA ATGGACTTCT TGTGGGATAC 
TGGCCAGCTT TCTTGTTCAG TCACTTGAGG AGTCATGCAA GTATGGTACA 
ATTTGGCGGC GAAGTTGTGA ACAGCCGATC AAGCGGTGCT CACACCGGAA 
CACAGATGGG AAGCGGCCAT TTCGCAGATG AAGGGTTTGA GAAAGCTGCC 
TACTTTAGGA ATTTACAAGT TGTTGACTGG GACAACAATC TCTTGCCTCT 
GAAGAATCTC CATGTCTTGG CCGATCACCC CGCTTGTTAT GACATCAGAC 
AAGGCAAAAA CAATGTATGG GGGACTTATT TTTACTATGG AGGGCCTGGT 
CGGAACCCAA GGTGTCCTTG ACTCACCCAA ACAGAAATAT AAAAAATATT 
TGATGTGAAT TTATGTTATT TTTCTGTTAC TAGATTTTTT TATTTCTTCT 
TAGATTTTTT TTTTTTTGGT GTTTGTAAGG CTGTTACTAA TAAAACAGTT 
TGTGGTTCTA CTGTATTTTT TTGACGTGAT GAAATAGATA ACTTTTAT

Gene models with high sequence identity

  1. AT5G50150.1 [+] show detail - Protein of Unknown Function (DUF239)
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

See the detailed result >

AT5G50150.1

Model type
Protein coding
Short Description
Protein of Unknown Function (DUF239)
Computational Description
Protein of Unknown Function (DUF239); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF239, plant (InterPro:IPR004314); BEST Arabidopsis thaliana protein match is: Protein of Unknown Function (DUF239) (TAIR:AT1G23340.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-78-I09 introduced

  • F16846 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found