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  3. RAFL06-78-M02

RAFL06-78-M02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03746)

full reading [+] show sequence

Nucleotide sequence: RAFL06-78-M02 - full reading 
AAAATCAGAA TTAGCATCTG TTTAGATTGG ATCTTGATCA CTGGCGGGCG 
AAGTTGGAGA AGATTGATGG AAAGCCGACC GGGAGTTTTG GTCGTCGGAT 
CCTCTGGCGT CGGCAAGCGC ACCCTCCTCT CTCGATTGCT CTCTGTGGAA 
TTTGAGGATT CATCGGAGTC ATCATCTCAA ACAGAAGTTC ATGGCTGGAC 
GATTAACACT AAGTATTACA CTGCGGATGT TTCTGTATGT ATATCACATA 
TTTGCGATGA ATACTCTCTA CCCAATCTCC CTAACTCACA TCCACTGGTG 
GCGTTAGTTA TGGTCTTCGA CTTGAGTGAG CTGTCAACCC TTGTTGCTCT 
TCAAGACTGG GTTTCTCATA CTGACATCAA CAGTTTTGAT ATATTGTTGT 
GCATTGGTAA CAAAGTAGAT CGTGTCCCTC ATCACCTTGC TCATGATGAA 
TATAGACGGC GCCTTTTGAA GGCATCAGAC CCCTCTAGAG ATCTGTATTC 
GGACATTGAT GACTTTGGGA TCTCCGAAAC TGAAGGAAGC AGCTTGTTGG 
GAAGTGAAGA TGCATCACTA GATATCAGGG GAGCATGTCT TGAGTGGTGC 
TCTGAGAATA ACATTGAGTT CATTGAGGCT TGTGCCTCTA ATCCTGATTT 
TGACAAGTGT TTATCAGTCG ATGGGGATTC TCAAGGGGTT GAACGTCTAT 
TTGGTGCTCT TTCGGCTCAT ATGTGGCCTG GGATGATTCT GAAATCTGGT 
GATAGGATAA ATGAACCTGT GTTACCTCAA GGGGAAGAGT TGTCAGAAGA 
AGAATCTGAA TATGAATTGG AGTATGAAGT GCTATCAGCA GGCTCAGGTG 
ATCCATGGGA TAATATTGAA GAAAGATGGG TTTCTGCAAG TGAAACGCAT 
TCACATGCCG ATGCTGGCGG ATCCACTTCA CAGGAAAACC TCCATGTAGA 
AAATAGTATG GTGAAACCGA ATAAAGTTGA TGAAGAGCTG CTGCCGTCAG 
GGTCAAGGTT AGAGCTGCAA AATGACACTG ACAGAGCAAT AGTAACAGAT 
GAAAAACCTT TGGGCACAGA AAATGAAAAA TGTTACGAGT TTGAAGATGT 
GGAACAGTTG ATGTCAGAAA TAGGAAACAT CCGGGACAAC TTGCGATTGA 
TGCCTGATTT CCAGAGGAGG GAAATAGCTG CAAATTTAGC GATGAAAATG 
GCTTCCATGT TTGGAGGTGA CACTGATGAC GAGGAAGAAC CTGAGTGAGT 
CTGTTTATAT CAGATATTGT AAAAGATCAG CGTGAGCTAC GGTTTAATCC 
TTTCTTTATA CAATCTTTAT CAAAGTCCGT GTCTTGTTTT TTGATAGATT 
CTGGCAGTAA TAGTCAGTTG CACGATGTAA TACTTATCTG GGCCGACCTG 
TTATGTATCG CTTTACTTTT TCTTCAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT5G65960.1 [+] show detail - GTP binding
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Alpha-/gamma-adaptin-binding protein p34 1e-30
HMMPfam MIRO-like 4.4e-07
superfamily P-loop containing nucleoside triphosphate hyd 7.3e-08
HMMPanther RAS-RELATED GTPASE 0.00069

See the detailed result >

AT5G65960.1

Model type
Protein coding
Short Description
GTP binding
Computational Description
GTP binding; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial Rho-like (InterPro:IPR013684), Alpha/gamma-adaptin-binding protein p34 (InterPro:IPR019341); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-78-M02 introduced

  • F12923 - Specific phenotypes were NOT observed.
  • F28336 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found