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RAFL06-78-M22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03750)

full reading [+] show sequence

Nucleotide sequence: RAFL06-78-M22 - full reading 
ACGCTCTCTC ACTGATCATT CACAATCTCT CTCTTTTTTT CACCGGCGAT 
AATTTTCCGA TCTCGATTAT AAGATGGCGA AGGAACCAGT TCGTGTTCTT 
GTTACCGGAG CTGCAGGACA AATCGGATAT GCTCTTGTTC CTATGATTGC 
AAGGGGGATA ATGCTTGGTG CTGATCAGCC TGTGATCCTC CACATGCTTG 
ACATCCCTTT TGCAGCAGAA GCTTTGAACG GTGTGAAGAT GGAATTGGTC 
GATGCTGCTT TCCCTCTTCT AAAGGGTGTG GTGGCTACAA CTGATGCTGT 
TGAAGCGTGT ACCGGTGTTA ATGTTGCTGT CATGGTTGGT GGTTTCCCGA 
GGAAGGAAGG AATGGAGAGG AAGGATGTTA TGTCCAAGAA CGTTTCCATT 
TACAAGTCTC AAGCTTCTGC CTTGGAGAAG CATGCTGCAC CAAACTGCAA 
GGTTCTGGTT GTTGCAAACC CTGCAAACAC CAATGCATTG ATCCTGAAGG 
AATTTGCACC ATCGATCCCA GAGAAGAACA TTACTTGCTT GACCAGGCTT 
GACCACAACA GGGCATTGGG ACAAGTGTCT GAGAGGTTAA GCGTACCAGT 
GTCTGATGTG AAGAACGTGA TTATCTGGGG AAACCACTCA TCAACCCAAT 
ACCCAGATGT CAACCACGCT ACCGTTAAGA CTTCCGTTGG AGAGAAGCCA 
GTGCGTGAGC TAGTCAAGAA TGACGAGTGG TTGAATGGAG AGTTCATCTC 
TACCGTTCAA CAACGTGGTG CTGCCATTAT CAAGGCCAGG AAGCTGTCTA 
GTGCACTTTC TGCAGCTAGC TCAGCTTGTG ACCATATCCG TGATTGGGTT 
GTTGGAACAC CTGAGGGCAC ATTTGTTTCA ATGGGAGTAT ACTCAGATGG 
ATCCTACAAT GTTCCAGCTG GACTTATCTA CTCCTTCCCC GTAACCTGCC 
GTAATGGAGA GTGGACCATT GTTCAAGGTT TACCGATTGA TGACGCATCG 
AGGAAGAAGA TGGATTTGAC AGCAGAGGAG TTGAAGGAAG AGAAGGACCT 
CGCTTACTCA TGCCTCTCTT AAACCGGTCT TTTCTCAGCT GGTTTAATCA 
GTGAAAGCTT TGTTTCGAAT AAAGAAGTTT TGTTATAAAA TGAACTTTTA 
ATAACCTCAT GAGCTTGAGG TTTAGTTTTC CGAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT5G43330.1 [+] show detail - Lactate/malate dehydrogenase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPIR L-lactate/malate dehydrogenase 1.1e-58
HMMPanther Malate dehydrogenase, NAD/NADP 9e-131
HMMTigr Malate dehydrogenase, NAD/NADP 3.4e-246
HMMTigr Malate dehydrogenase, NAD-dependent, cytosolic 1.2e-282
superfamily Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 6.1e-60
superfamily NAD(P)-binding domain 1.1e-43
HMMPfam Lactate/malate dehydrogenase, C-terminal 3.5e-41
HMMPfam Lactate/malate dehydrogenase, N-terminal 1.4e-33
PatternScan Malate dehydrogenase, active site 0
Gene3D NAD(P)-binding domain 7.9e-52
Gene3D Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal 8e-71

See the detailed result >

AT5G43330.1

Model type
Protein coding
Short Description
Lactate/malate dehydrogenase family protein
Computational Description
Lactate/malate dehydrogenase family protein; FUNCTIONS IN: in 6 functions; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Malate dehydrogenase, NAD-dependent, cytosolic (InterPro:IPR011274), Lactate/malate dehydrogenase, N-terminal (InterPro:IPR001236), Malate dehydrogenase, NAD/NADP (InterPro:IPR010945), Lactate/malate dehydrogenase, C-terminal (InterPro:IPR022383), NAD(P)-binding domain (InterPro:IPR016040), L-lactate/malate dehydrogenase (InterPro:IPR001557), Malate dehydrogenase, active site (InterPro:IPR001252), Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal (InterPro:IPR015955); BEST Arabidopsis thaliana protein match is: Lactate/malate dehydrogenase family protein (TAIR:AT1G04410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-78-M22 introduced

  • F30247 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found