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  3. RAFL06-79-F01

RAFL06-79-F01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17238)

full reading [+] show sequence

Nucleotide sequence: RAFL06-79-F01 - full reading 
GAACATCCAT AACAATGGCT TCCAAATCCA CCGTCACAAC ATTGACCATC 
TTCTTCTTCT TCTTCTTCTT CTTCATCGAG CCTAAGGTTC AGTCTCAGCA 
AATCTCAGCC GTTGATTCAG AATGCACCAA CCGTTGGATT CACATCCGAA 
CACTCCCATC ACGATTCAAT CTCGATCTTC TCTCAACTTG TAATCGTTAC 
CCAATCACCG ACGATCTTTG CCCTTACTTA GCCAATCACG GACTCGGCCC 
AAAAACCCAT ACCCGTACCC GAAGCTGGTA TCGAACCGAC CCGTTACTTC 
TCGAACTCAT TTTCCACCGT CGGATTCTCG AATATCCATG TCTCACACCC 
GACCCGAATC TCGCCTCCGC AATCTACCTC CCTTACTACG CCGGCATCGA 
TTCTCTCCGT TATCTCTACG GACCCGATTT AAACTCAAGC GCTGATCACG 
GGTCGGATCT TCTCGAGTTT TTGACCCGTG ATCAACCCGA GATCTGGTCT 
CGTCGCTCCG GTCATGATCA TTTCCTCGTT ATGGCTCGAC CCGCTTGGGA 
TTTCTCTCAG CCGTTGACCG TTGACCCTCC GATTTGGGGA ACGTCGTTTC 
TAGAACGCCG TGAGTTTTTC AATCTAACGG CGTTAACTCT CGAATCTCGT 
TACTGGCCGT GGCAAGAACA AGCCGTTCCT TATCCGACGT CGTTTCATCC 
ACACAGCTTG CCGTTTTTGG AATCGTGGAT CCGTCGTGTC CGTCGCTCAC 
GGCGAACTTC TCTTATGCTA TTCGCCGGCG GTGGTGGTAC CTCCTCTTCT 
CCTAACATCC GTCGTAGTAT CCGCTTAGAG TGCACTAGCA TAAACGCAAC 
ACAATCGGAT AATAAAATCT GCGATTTCGT CGATTGTTCT AACGGAATCT 
GTGAGCATGA TCCGATTAGA TTCATGAGAC CGATGTTACA ATCATCGTTT 
TGTTTACAAC CACCGGGAGA TACACCAACA AGGAAAGCTA CATTCGACGG 
AATCATCGCC GGATGTATAC CGGTGTTTTT CGAGGATCAA ACGGCGAAAA 
TGCAGTACAA ATGGCATTTA CCGGAGTCCG AATTCGCGGA GTTTTCGGTT 
ACGATTCCGA AGGAAGATGT AGTGTTTAGA GGAGTTAGAA TACAAGATGT 
GTTGATGAGT ATACCTAAAG AAGAAGTTAC TAGAATGAGA GAAAGAGTTA 
TAGAGATGAT GCCTAGAGTT ATGTATAGAA GACATGGAGC TTCAATGGGA 
TTGATGAATA AGAAAGATGC TGTTGATATT GCTATTGATG GAGTTTTGGA 
CAGGATTATA TCTAGAGTTT GATTCTTACT AACAACAGTT TTAAACAGGT 
ATGTATTATG TTGTTGTTTG TTTAAATTGT TATACTTCAA AATTCATTTT 
TGATTGTTCA TGTTTGCCAA ATCTCATTGA GATTTTTTGG TTAGTAATAT 
ACTACTATAG TGGTTACATT AATAATGAAT GTTAAGGTTT AGGTGAGATT 
TGTGTAATGA TATGGTTATT TGTATCATTG TAAGTCATGG TAATGATTAG 
TGATTATTGT AATGTTTTTG CTTGTCTACA AAAAAAA

Gene models with high sequence identity

  1. AT4G22580.1 [+] show detail - Exostosin family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERAS 5e-15
HMMPfam Exostosin-like 5.3e-64

See the detailed result >

AT4G22580.1

Model type
Protein coding
Short Description
Exostosin family protein
Computational Description
Exostosin family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT4G13990.1); Has 709 Blast hits to 706 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 670; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-79-F01 introduced

  • F19531 - Specific phenotypes were NOT observed.
  • F27624 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found