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  3. RAFL06-79-H24

RAFL06-79-H24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03761)

full reading [+] show sequence

Nucleotide sequence: RAFL06-79-H24 - full reading 
CTCTGATTCA TCTCTCTCTC TCTCTTCATT TCCATGGAAG GAAGGTGATG 
AGCTTTCTCA ATCTCTCTTT ACTGATTCTT AATGAAAGTC ATCTCCTTTC 
TCTTTGGTAT CCCTTTTCTT CTTCTCTGCT TAATTCCTGA CCAAAAATTG 
TGACAAGATC TTTCAATCCA AAAGCTATAT ACATTAAGAG CTCAGGTCAC 
TATCTGACGG GATCCGTGAC AATAGTGGTT ACTGGAGTCA AAAGCAGCTC 
CTTGAATCTT GAGTGTTAAG TAGATAGGTA AGGTAACCGT TCATGGCCTC 
GAAGTATGGT TCTGGAGTTC TCCCAGAAAA TAAGAAGGAA AAGGGCGATA 
AGGAAACCCC GGAAACATCT TATTCCAGTC AAAGTGTCTC AGTAAACACT 
TTGGCAGATC AAGTATCTTC AACTTTGTCT TTTGCTCCAA GCAGCGACAG 
TAAAACTGGA GGTGAAGTTA AATTTAATGA AAAGTCTGAT CAGAGCGGGA 
AGAGTAACAC ATGTAGACCA AGCACAAGCA GTGATATCAG TGATGAGAGC 
ACATGTAGCA GCTTTAGTGG TAACAACAAG CCTCACAAGG CGAATGACGT 
GAGATGGGAA GCAATTCAAG CTGTCCGAAC GAAACATGGC GTATTGGGGT 
TGAACCATTT TAGGCTCTTG AAGAGGTTAG GGTGTGGGGA TATCGGAACT 
GTCCACCTTG CTGAGTTGCA CGGAACAAGG TGTTTTTTTG CAATGAAGGT 
TATGGACAAA GGGGCTTTGG CTAGCCGTAA AAAGCTTCTT AGAGCTCAGA 
CCGAGAGGGA GATATTGCAG TGTCTTGACC ACCCTTTTCT CCCAACTTTG 
TATAGTCACT TCGAGACTGA GAAGTTCTCA TGTTTGGTTA TGGAGTTCTG 
TCCTGGAGGT GACTTGCATA CCCTTCGACA AAGACAGCCC GGGAAGCGAT 
TTTCAGAACA AGCAGCAAAG TTTTATGTAG CGGAAGTACT TCTTGCAATG 
GAATATCTTC ATATGCTTGG CATCATATAC CGCGATCTAA AGCCAGAGAA 
TGTTCTTGTT AGAGATGATG GACATGTGAT GCTTTCTGAC TTCGACCTCT 
CCTTGAGATG TACTGTTAGC CCCACAGTGG TCAGATCAAC TGTTCTTGCG 
TCTGAAGGGC AAAAGAACTC GGGTTATTGT GCGCAACCTG CTTGCATCCA 
ACAGCCATCT TGCATTTCTG CTCCTACAAC ATGCTTTTCT CCACGTTATT 
TCTCAAGTAA ATCCAAGAAA GACAAGAAAA TGAAAAACGA AACTGGAAAC 
CAGGTAAGTC CATTGCCCGA GCTCGTTGCT GAGCCCACAA GTGCTCGCTC 
AATGTCATTT GTTGGCACAC ATGAGTATTT AGCTCCTGAG ATCATCAAAG 
GTGAAGGGCA TGGGAGTGCG GTTGATTGGT GGACTTTTGG GATCTTTTTG 
TATGAGCTAT TGTTTGGTAA AACCCCGTTT AAAGGGTCAG GAAACCGAGC 
AACACTCTTC AACGTTGTGG GTCAGCCTCT GCGTTTCCCA GAATCTCCAG 
TTGTCAGTTT TGCTGCTAGG GATTTGATTA GGAGTCTGCT TGTGAAAGAG 
CCTCAGCATA GATTAGCGTA TAAGCGTGGT GCAACTGAGA TGAAGCAACA 
TCCTTTCTTT GAAGGAGTGA ATTGGGCATT GGTTCGATGC GCTAGCCCAC 
CAGAGATACC AAAACCGGTT GATTATGAGA GTGCGCCTGC TACTCCAGCA 
GCAGCCACAT CTACTAGTGT CAAGTCTGAC CAGAGTAATT ATCTGGAGTT 
CGATTTCTTT TGACATATTT CAGCAAGAAA ACTGCCATTA GATTTATCAA 
TTTGTTCTTG GCGATCTGCA AATACGTTTA GTATTTTGAA AATGTGATAA 
CTCTTTTTAA TTCTTTGTCA ATGCCATTCT TGAGAGTTCA CGCCAAAAAA 
AAAAAAAAAA

Gene models with high sequence identity

  1. AT4G26610.1 [+] show detail - D6 protein kinase like 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Protein kinase, catalytic domain 43.453
HMMPfam Serine/threonine-protein kinase-like domain 1e-35
HMMPfam Serine/threonine-protein kinase-like domain 5.8e-20
HMMPanther NONPHOTOTROPIC HYPOCOTYL PROTEIN 1(PHOTOTROPI 1.1e-255
HMMPanther SERINE/THREONINE PROTEIN KINASE 1.1e-255
HMMSmart Serine/threonine-protein kinase domain 8.5e-87
HMMSmart Tyrosine-protein kinase, catalytic domain 0.0000004
Gene3D no description 1.1e-58
PatternScan Serine/threonine-protein kinase, active site 0
superfamily Protein kinase-like domain 1.7e-84

See the detailed result >

AT4G26610.1

Model type
Protein coding
Short Description
D6 protein kinase like 1
Computational Description
D6 protein kinase like 1 (D6PKL1); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: D6 protein kinase (TAIR:AT5G55910.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-79-H24 introduced

  • F10011 - Specific phenotypes were NOT observed.
  • F12330 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / whole plant::decreased height / stem::present in fewer numbers in organism / stem::abnormal / stem::abnormal
  • F18049 - Specific phenotypes were NOT observed.
  • F23403 - seed::increased size / seed::increased length / seed::decreased width
  • F24337 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found