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RAFL06-80-B19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03774)

full reading [+] show sequence

Nucleotide sequence: RAFL06-80-B19 - full reading
ACAAATTAAA GAAGCAGAAA CAAAAACAAG TAAAACAGAA ACAATCAACA 
CAGAGAAACC ACCTGTTTGT TCAAGATCAA AGATGTCTAT AAATATAAGA
GACCCTCTTA TAGTAAGCAG AGTTGTTGGA GACGTTCTTG ATCCGTTTAA
TAGATCAATC ACTCTAAAGG TTACTTATGG CCAAAGAGAG GTGACTAATG
GCTTGGATCT AAGGCCTTCT CAGGTTCAAA ACAAGCCAAG AGTTGAGATT
GGTGGAGAAG ACCTCAGGAA CTTCTATACT TTGGTTATGG TGGATCCAGA
TGTTCCAAGT CCTAGCAACC CTCACCTCCG AGAATATCTC CATTGGTTGG
TGACTGATAT CCCTGCTACA ACTGGAACAA CCTTTGGCAA TGAGATTGTG
TGTTACGAAA ATCCAAGTCC CACTGCAGGA ATTCATCGTG TCGTGTTTAT
ATTGTTTCGA CAGCTTGGCA GGCAAACAGT GTATGCACCA GGGTGGCGCC
AGAACTTCAA CACTCGCGAG TTTGCTGAGA TCTACAATCT CGGCCTTCCC
GTGGCCGCAG TTTTCTACAA TTGTCAGAGG GAGAGTGGCT GCGGAGGAAG
AAGACTTTAG ATGGCTTCTT CCTTTATAAC CAATTGATAT TGCATACTCT
GATGAGATTT ATGCATCTAT AGTATTTTAA TTTAATAACC ATTTTATGAT
ACGAGTAACG AACGGTGATG ATGCCTATAG TAGTTCAATA TATAAGTGTG
TAATAAAAAT GAGAGGGGGA GGAAAATGAG AGTGTTTTAC TTATATAGTG
TGTGATGCGA TAATTATATT AATCAAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT1G65480.1 [+] show detail - PEBP (phosphatidylethanolamine-binding protein) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Phosphatidylethanolamine-binding protein PEBP 1e-59
superfamily Phosphatidylethanolamine-binding protein PEBP 5.7e-54
PatternScan Phosphatidylethanolamine-binding, conserved site 0
HMMPfam Phosphatidylethanolamine-binding protein PEBP 4.8e-24
HMMPanther PHOSPHATIDYLETHANOLAMINE-BINDING PROTEIN 2.2e-58

See the detailed result >

AT1G65480.1

Model type
Protein coding
Short Description
PEBP (phosphatidylethanolamine-binding protein) family protein
Curator Summary
FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.
Computational Description
FLOWERING LOCUS T (FT); FUNCTIONS IN: phosphatidylethanolamine binding, protein binding; INVOLVED IN: photoperiodism, flowering, positive regulation of flower development, regulation of flower development; LOCATED IN: nucleus, cytoplasm; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylethanolamine-binding, conserved site (InterPro:IPR001858), Phosphatidylethanolamine-binding protein PEBP (InterPro:IPR008914); BEST Arabidopsis thaliana protein match is: PEBP (phosphatidylethanolamine-binding protein) family protein (TAIR:AT4G20370.1); Has 2182 Blast hits to 2182 proteins in 306 species: Archae - 0; Bacteria - 0; Metazoa - 594; Fungi - 140; Plants - 1404; Viruses - 3; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-80-B19 introduced

  • F12202 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / stem::decreased thickness / cauline leaf::epinastic / whole plant::decreased height / stem::abnormal / rosette leaf::decreased size / rosette leaf::upturned / rosette leaf::increased width / stem::decreased thickness / stem::abnormal
  • F23728 - seed::increased size / seed::increased length
  • F24649 - rosette leaf::decreased size / rosette leaf::increased width / stem::decreased thickness / whole plant::decreased height / stem::abnormal

Mutant lines with disrupted or induced

5 mutant lines found