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RAFL06-80-E11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03779)

full reading [+] show sequence

Nucleotide sequence: RAFL06-80-E11 - full reading 
AAACCCCCAA AATTTGCTTC GAGAAGAAAA TGAATGGTGT CTCTCGTCAT 
CTTCGAGCTT CTTCACTTCT TTCATTAATT CGCAGCTATG GTGGAATCAA 
TTCGGTCTGT CGATTTTCGT CTCAATCTGA TGGCTTCTCT GGAGGGAGAT 
TCAGAGAGCA AGTGCCAGTT TCTGGAGAGT CTGCAAATAA TTCAGGCTTA 
TCAAACACGG GAAGAATCGG TTCCTCTCCG GAGCCTAATC CTTCGACTTT 
GAGAACTTTT GGTGATATGA AAGCAGGCTT GTTAAACAGA GGAGTCAATG 
GTTTCTCGGC TCCTAATGCT CCTCCTACCT TCAAAAGTTC ACTGAGATCA 
AGATTACCAA ACTCTCTACC TGATCAGTTC GGTCAGACGA ATCCAGGCTT 
ACCAAACACG GGAGGAAGCG GATTCTCTGC TCCAAGTTTA TCAAGCTACG 
AGAATTTCAC TCAATCTTCT TCGCTTCTTA AGGAGAATTC CCGCAGTGGA 
GGGAAGTCAA GCGACCTGGA TTTTGTTAGA GAAGTAATAG AAGATGAAGG 
AAGGAGAACC GCAGGGATAT TCTCTCATTT CCAACGCCCA AACCTCGAAA 
CGAATGCTGA CATCATTCAC ATCAAGATGT TGAGGAACAA CACTTTTGTC 
ACGGTTACAG ATTCCAAAGG AAACGTCAAA TGCAAAGCTA CATCTGGTAG 
TTTACCCGAT CTGAAAGGTG GAAGGAAGAT GACGAATTAC ACAGCTGATG 
CAACCGCTGA AAACATTGGG AGAAGAGCTA AGGCTATGGG GCTGAAATCT 
GTGGTGGTTA AGGTGAACGG ATTTACGCAT TTCGGAAAGA AGAAGAAAGC 
TATTATCGCG TTTAGAGACG GTTTCACCAA CTCGAGGTCT GATCAGAATC 
CGATAGTCTA CATCGAGGAC ACTACTAGGA AAGCTCATAA TGGTTGCAGA 
TTACCAAGGA AACGTCGGGT GTGAAAAGAA AACGTCCCAT GTCGTCGTCT 
CTTGTTATTC TATGGTCACT ATAGAAACCA TTTGTTTTGG CAAGTTATAT 
CTTTTCTTGG TTATGTTTTC TCCTTCAAAT CCGAGGAAAA TCGGGTTTAG 
ATAATTGGAC CAAAGCGATT TGATTAATAA ACCGGAATTG TTTTCCAAAA 
AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT1G31817.1 [+] show detail - Ribosomal L18p/L5e family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Ribosomal protein S11 1.1e-24
HMMPanther gb def: Putative 30S ribosomal protein S11 1.6e-98
HMMPanther Ribosomal protein S11 1.6e-98
HMMPfam Ribosomal protein S11 2.3e-19
superfamily Translational machinery components 1.8e-29

See the detailed result >

AT1G31817.1

Model type
Protein coding
Short Description
Ribosomal L18p/L5e family protein
Computational Description
NUCLEAR FUSION DEFECTIVE 3 (NFD3); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971); BEST Arabidopsis thaliana protein match is: ribosomal protein S11 (TAIR:ATCG00750.1); Has 7495 Blast hits to 7495 proteins in 2576 species: Archae - 12; Bacteria - 4865; Metazoa - 67; Fungi - 4; Plants - 661; Viruses - 0; Other Eukaryotes - 1886 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-80-E11 introduced

  • F14323 - rosette leaf::dark green / rosette leaf::increased size / rosette leaf::decreased width / stem::abnormal / cauline leaf::abnormal

Mutant lines with disrupted or induced

3 mutant lines found