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  3. RAFL06-80-I11

RAFL06-80-I11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03782)

full reading [+] show sequence

Nucleotide sequence: RAFL06-80-I11 - full reading 
ATTATACTAG CTAGCTAGTC TATATATCAT AGGGAAGAGA AAGAAAAAAC 
ATTCTACTTC ACGCAAATAT TTTATCTCTT TGTTTCTTGT TCTTAATTAG 
GGTTTGATTG AAGAAAATGG AAGGAGAGAA TAATATGGAG AAAGGATTGT 
TATTGGCAAA AAAGGAAGAC AGTGCAAATA CAACTCCACT TCTTATCTTC 
TCCACCTTCA TCATTGTCTC TGCCTCCTTC ACCTTTGGCG CTGCCATAGG 
TTATACTGCA GATACAATGT CCTCCATTAT GTCAGACTTG GATCTTTCTC 
TCGCACAATT TTCGCTGTTT GGTTCGTTGT CGACGTTTGG AGGAATGATC 
GGTGCAATAT TCAGCGCCAA AGCTGCAAGT GCCTTCGGTC ATAAAATGAC 
GTTGTGGGTG GCTGATTTAT TCTGCATAAC TGGTTGGCTT GCAATTTCAC 
TAGCCAAGGA TATTATTTGG CTTGACATGG GGCGATTTTT GGTGGGAATT 
GGAGTTGGTC TCATTAGCTA CGTGGTTCCT GTATATATTG CAGAAATAAC 
ACCCAAGCAC GTAAGAGGGG CTTTTACATT TAGCAATCAG CTTTTGCAAA 
ACTGTGGAGT TGCAGTCGTA TATTACTTTG GAAATTTCTT GTCATGGAGA 
ACTTTAGCCA TAATAGGTAG TATTCCATGT TGGATACAAG TTATTGGTTT 
GTTCTTCATA CCTGAGTCTC CAAGATGGCT GGCGAAAAAA GGTCGTGATA 
AAGAATGTGA AGAAGTTCTT CAAAAGTTAA GAGGAAGAAA ATACGATATT 
GTGCCTGAAG CTTGCGAAAT CAAGATTTCA GTTGAAGCTT CGAAGAAAAA 
TTCGAATATC AACATTCGTA GTCTTTTCGA AAAGAGATAT GCTCATCAAC 
TTACAATCGG CATTGGTTTG ATGCTTCTGC AACAGTTATG TGGAACTGCA 
GGAATAAGTT CTTACGGAAG CACTCTATTT AAACTTGCCG GGTTTCCTGC 
TCGGATTGGG ATGATGGTGT TATCTCTTAT CGTCGTACCA AAATCTTTAA 
TGGGTCTAAT CCTCGTGGAT CGATGGGGAA GACGCCCACT TCTTATGACT 
TCAGCGTTGG GGTTGTGTTT AAGCTGTATC ACATTGGCAG TAGCGTTTGG 
AGTTAAAGAT GTCCCGGGAA TTGGAAAAAT TACTCCAATT TTCTGTTTCA 
TTGGAATATT GTCGTTTACG ATGATGTTCG CAATTGGAAT GGGAGCGTTA 
CCATGGATTA TAATGTCTGA GATATTTCCA ATGGATATAA AGGTATTAGC 
TGGGAGTTTA GTGACCATAG CAAATTGGTT CACTGGTTGG ATCGCCAACT 
ATGCTTTCAA TTTTATGTTG GTTTGGAGCC CAAGCGGGAC TTTTATAATA 
TCCGCTATAA TCTGTGGAGC AACAATTGTA TTCACATGGT GCTTGGTGCC 
GGAGACTCGA AGATTAACGT TAGAAGAAAT CCAACTGTCG TTTGTCAATG 
TTTAGGGTTC ATCGGAAGCA TTCATATATA CATCATAAAG GTTGATATAC 
TACATCATTT GCTACATATA ATTCGGCTTC GATCGTATCC ATAAATTATT 
TGATTAATTC AATATAATTA ACTAAAGTTT CCATTGTTTA GTTGAAAAAA 
AAAAAAAAAA

Gene models with high sequence identity

  1. AT3G05400.1 [+] show detail - Major facilitator superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMTigr Sugar/inositol transporter 1.4e-58
PatternScan Sugar transporter, conserved site 0
PatternScan Sugar transporter, conserved site 0
HMMPfam General substrate transporter 6.6e-77
FPrintScan Sugar/inositol transporter 2.2e-13
FPrintScan Sugar/inositol transporter 2.2e-13
FPrintScan Sugar/inositol transporter 2.2e-13
FPrintScan Sugar/inositol transporter 2.2e-13
superfamily Major facilitator superfamily, general substrate transporter 5.8e-60
ProfileScan MFS 34.453
HMMPanther SUGAR TRANSPORTER PLANT 1.4e-184
HMMPanther SUGAR TRANSPORTER 1.4e-184

See the detailed result >

AT3G05400.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G27350.1); Has 24275 Blast hits to 23828 proteins in 1815 species: Archae - 445; Bacteria - 9241; Metazoa - 4940; Fungi - 6177; Plants - 2315; Viruses - 0; Other Eukaryotes - 1157 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-80-I11 introduced

  • F19434 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found