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RAFL06-80-L04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17241)

full reading [+] show sequence

Nucleotide sequence: RAFL06-80-L04 - full reading 
CCCACCCAAA ACTGTGAAAT CGAGCAGCAT ACTCTTCCTG ATGGACAGGT 
GATAAGCATC GGGCGAGAGA GATACTCGGT TGGAGAAGCT CTGTTTCAGC 
CATCAATACT GGGACTGGAG GAGCATGGAA TCGTTGAGCA GCTTGTCCGG 
ATTATCTCCA CAGTGTCATC TGAGAACCAT AGGCAGCTCT TGGAGAACAC 
TGTACTTTGT GGTGGTACAA CCTCCATGAC AGGATTCGAA AGTAGATTCC 
AGAAAGAAGC AAACTTGTGC TCATCTGCCA TTAGGCCAAC ACTGGTGAAA 
CCGCCAGAAT ATATGCCGGA GAATTTGGGG ATGTATTCGG CTTGGGTTGG 
AGGAGCCATA CTAGCTAAAG TGGTGTTTCC GCAGAATCAG CACGTTACTA 
AAGCAGATTA TGACGAGACT GGACCATCAG TGGTTCACAG GAAATGTTTC 
TGAAACCATA GACTATAAAA CGATGTTGTT GTTGTAGCTG AGGATTTTTT 
TTTTGGTTGG CTTTGGTTTG AAGATGTGGA CCAGATTATG TAGTACATTT 
CAAATTATGG CTTCCAAATA TCGACTAATA TGTGTTCAAT GAGCCCTTTT 
CTGAAAACAT GGAAAAAAAA AA

Gene models with high sequence identity

  1. AT3G60830.1 [+] show detail - actin-related protein 7
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther ACTIN-RELATED PROTEIN 2.6e-124
HMMPanther Actin/actin-like 2.6e-124
HMMPfam Actin/actin-like 2.1e-34
superfamily Actin-like ATPase domain 6.2e-35
Gene3D no description 1.7e-14
Gene3D no description 1.3e-07

See the detailed result >

AT3G60830.1

Model type
Protein coding
Short Description
actin-related protein 7
Curator Summary
Encodes an actin-related protein required for normal embryogenesis, plant architecture and floral organ abscission.
Computational Description
actin-related protein 7 (ARP7); CONTAINS InterPro DOMAIN/s: Actin/actin-like (InterPro:IPR004000); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 12219 Blast hits to 11995 proteins in 2504 species: Archae - 0; Bacteria - 50; Metazoa - 5224; Fungi - 3189; Plants - 1407; Viruses - 2; Other Eukaryotes - 2347 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-80-L04 introduced

  • F10829 - Specific phenotypes were NOT observed.
  • F13108 - Specific phenotypes were NOT observed.
  • F16839 - Specific phenotypes were NOT observed.
  • F18739 - Specific phenotypes were NOT observed.
  • F27621 - seed::increased size / seed::increased length
  • F29507 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found