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  3. RAFL06-80-M23

RAFL06-80-M23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03787)

full reading [+] show sequence

Nucleotide sequence: RAFL06-80-M23 - full reading 
AAAAGAAGAA GAAGAAGAAA AACTTTCGAT ATGGATAAGA GCTGTAACTC 
CTCCGGCGAT TCCTCCGCCG TATCCGCCTC TGCAACGAGT AGTACCGGTA 
ACAATACAAC GAACAGAGAT CATTACCTGA GACAACTCAA TAAGCTGTCT 
CATAAGATAT CAAAACCGAC GAACTCTTCC TCCTCCGTCT CCGTCGCGAA 
TCGTGAAATT GATCTTCCAC CTCCTCCACC GCTGCAAATC AATCAAGGGA 
ATCTCCATCA ACATCAACCT CCTGTTTACA ATATCAACAA GAACGATTTC 
AGAGATGTTG TTCAGAAACT AACCGGTTCA CCTGCACATG AACGGATCTC 
TGCTCCGCCG CAACAACCGA TTCATCACCC TAAACCTCAA CAGAGTTCGC 
GTCTACATAG GATCCGTCCT CCTCCTTTGG TTCACGTTAT CAATCGTCCT 
CCTGGTTTGC TAAATGACGC ACTTATCCCT CAAGGTTCTC ATCACATGAA 
TCAAAACTGG ACTGGCGTTG GATTTAACCT TCGACCAACG GCGCCGCTTT 
CTCCTCTCCC GCCGTTACCA CCGGTTCACG CGGCGGCGGA ATCACCGGTC 
TCTTCGTACA TGCGGTATCT CCAGAACTCG ATGTTCGCAA TCGATTCGAA 
TCGGAAAGAG TTCTCTGGAT TATCTCCGTT AGCTCCTTTG GTCTCACCTC 
GTTGGTACCA ACAACAGGAA AACGCTCCAC CATCGCAGCA TAACAGTTTT 
CCACCACCAC ATCCTCCTCC TCCTTCCTCT GCTGTTTCGC AGACGGTGCC 
GACATCGATT CCGGCGCCTC CACTGTTTGG ATGTTCAAGT TCGCCTAAAT 
CTCCGTACGG ATTACTCTCA CCGAGCATAC TTTTATCGCC ATCGTCAGGT 
CAATTAGGGT TCCCTGTATC TCCGACGACG GTGCCGCTTC CTAGCCCTAA 
ATACAAAGGT CATTGATCAG AAAATCGGAA ACCCTTGTCG GTCAAAGTGA 
GAAAACGTCG TCGTTTTGAC CGTCGCGACA AAATTCCCTT TGTTCTTTTT 
GTACATCATT AGTGGAGAGT GGTGGGATCA TTTGTTTTTT TTTTTGTTAA 
TTAACTCAAA GATTACTTAA ATCCGTTTTT TTTTTTACTT TCTTTTGTTT 
TCATGGTTTG TTCATGTTAG AAACAAAGAA GACTAGGAAA AAGAAAGGAA 
TACACTTTTG CAACTAAAAA AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT1G78310.1 [+] show detail - VQ motif-containing protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT1G78310.1

Model type
Protein coding
Short Description
VQ motif-containing protein
Computational Description
VQ motif-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G35230.1); Has 2188 Blast hits to 1760 proteins in 229 species: Archae - 0; Bacteria - 55; Metazoa - 822; Fungi - 398; Plants - 644; Viruses - 80; Other Eukaryotes - 189 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-80-M23 introduced

  • F02506 - Specific phenotypes were NOT observed.
  • F11816 - seed::increased size / seed::increased length
  • F13716 - Specific phenotypes were NOT observed.
  • F15142 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found