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RAFL06-80-P18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17243)

full reading [+] show sequence

Nucleotide sequence: RAFL06-80-P18 - full reading 
AGAATCATCA AACATCCAAA CTCTATCCTT TCGTTTTCTT GTCAGACAAA 
AACTAATACT AGATGGGTAA CAGTTTAGGC GGCAAGAAAA CGACCAAAGT 
CATGAAGATA GACGGCGAGA CTTTTAAACT GAAAACTCCG GTGACGGCTG 
AGGAGGTCTT AAAAGACTTT CCCGGCCACG TCTTGTTAGA CTCCGAATCC 
GTCAAGCACT ACGGTGCCCG AGCCAAACCA CTTGAGGCGA AGCAGAGGTT 
GGAGGCGAAG CGGCTTTATT TTGTGGTGGA GCCGGTGAAA GAGTGTCCAC 
CGAGAAGGGT AAGATCAGGA ATTCACGTGA GTGCAAAGGA GAGGCTTGAG 
AGTCTCATGC TGGCCCGGAG ATCGTCTTCC GATCTCTCCA TACTCAAACC 
ACCAGGAGGA TGGACGACGG AGGAAGAAGA AGGAGCGGTG AGGAGGGTGA 
AGGTGAGGAT TCCCAAAGCT GAGCTTGAAA AGCTCGTTAA AGAAGGAGCC 
ACCGAAGCCG AAGCTACGCA GAAGATCGCT GCTCTCTTTA TGGCCAAACA 
GAGGCAAGAG GAGGCATATC AGAACACACG ACAGGACGAG CCCGCCACCA 
CGGCCACCGC CACCGCCACC ACCACCGCCA CAAGAGGAGT CAAATCCCGT 
TTGAAACGAG TGAGTTTCAT GGCGGAAAGA GGAGGAGGGA GCGAGATCAC 
TGTAGCTTGA ACCAATAAAC ATATGTATTA GAGAATGCTT CCCAACGTTT 
CTGCAAATTC TATGTACATA AAAAACGCAG AAAGTTTGAG AGAAAGCTTA 
TTCAGATATT CATCCATGTC TCCACTCTAT TGTACTCAAG AGTTTTACTA 
TTATTACATT GTAGAAGAAA CAGTCATTTT ATAGGCAAAA AAAAAA

Gene models with high sequence identity

  1. AT2G01340.1 [+] show detail - At17.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation,...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT2G01340.1

Model type
Protein coding
Curator Summary
Encodes a protein whose expression is responsive to nematode infection.
Computational Description
At17.1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, response to nematode; LOCATED IN: plasma membrane; BEST Arabidopsis thaliana protein match is: plastid movement impaired 2 (TAIR:AT1G66480.1); Has 110 Blast hits to 110 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-80-P18 introduced

  • F02128 - Specific phenotypes were NOT observed.
  • F10032 - rosette leaf::decreased size / rosette leaf::abnormal / stem::increased thickness / stem::decreased thickness / seed::present in fewer numbers in organism / fruit::decreased length / stem::abnormal / stem::abnormal

Mutant lines with disrupted or induced

20 mutant lines found