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  3. RAFL06-81-E11

RAFL06-81-E11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03799)

full reading [+] show sequence

Nucleotide sequence: RAFL06-81-E11 - full reading 
AGCTCCGGCG AAGAGTCTCT CCGTGAGAGC GAGCTTGTCC GATTTGTAAG 
CACGAGACGG AACCATGTTG TGCGGAGGCT CACGTGTCTT GCAGCATTTG 
TCCGACCACA ATCATCATAA TTCGATTGGT TTAGGATTAG GGTTTTGTGG 
TGCTAAGATT GTGCAGCTCT CTTCATTCTT TCTCAGGCCT TCTCAGGCTA 
TGGCGAAGAG TCATCATTTC AGCCGTAAAT TGCGTCAGCG GATGATTTCT 
TCATTTGGGT CTCATTGCAG AACATCCGGA GAAGTCCCAA TTCTTCACAA 
TTGTTTCAGC CAACGAGAAG ATGATCCTGA GCTTCCAGTT GAAGGGTTAT 
CTCCAGTGTC AGGAGGCATT GTTGCTCTAG GGAAGTTTGA TGCCTTACAT 
ATCGGCCATC GAGAGCTTAC AATTCAAGCT TCAAGAATTG GAGCTCCATA 
TCTATTATCT TTTGTTGGAA TGGCCGAGGT ACTTGGTTGG GAGCCCAGGG 
CACCTATAGT GGCCAAATGT GATCGACAAA GGGTGCTTAC CTCTTGGGCC 
TCATATTGTG GAGACAGAGC GCCTGAAGAG TATGAGATAG AATTTGCCAG 
CGTGCGACAT CTTACCCCAC GACAGTTTGT GGAGAAGCTG TCAAAGGAGC 
TCAGAGTCTG CGGAGTTGTG GCAGGTGAAA ATTACAGATT TGGATATAAA 
GCGTCTGGTG ATGCCTCTGA GCTAGTGAGA CTGTGCGAGG AATGTGGTAT 
CACTGCTTGC ATCATAAACT CTGTGATGGA CATGAAGCAA GGCTCAGCAA 
AGAGAGACTC AGGGGACTCA AAAGATAGAG GGCAAGTCTC TTCTACACGT 
GTACGCCAAG CTCTTGCGGC GGGAGATATG AGGTACGTAT CAGAGCTCCT 
TGGCAGGGCA CATCGTCTTA TCTTGAGAGT CAGAACCCAA GATATGCCAA 
GTGAAAGGAT GATCTCAGTC CCGAGATCAT CAATACTTAA TTTGCCACCA 
GGGATCGGAA TTTATAAGGC ATGTTTGCTT CTAGTTGGTG ATGAGTCTTC 
AGTTCCGTGT ACCGTAGTTG TTGATACATC AAATATCCAT GTAGAAACAG 
AGGAGGTACG ACTCTGTAAT TTAGATTGGT CTCAAGAATT TCGACTCGTG 
AGTGTTGAGT TCGGTTGAGT CAATCTTAGT TCGTATAAAT TCATATTTCT 
AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT5G08340.1 [+] show detail - Nucleotidylyl transferase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam FAD synthetase 1.1e-09
Gene3D Rossmann-like alpha/beta/alpha sandwich fold 1.5e-23
HMMPanther PROTEIN-S ISOPRENYLCYSTEINE O-METHYLTRANSFERA 1.5e-83
superfamily Nucleotidylyl transferase 5.8e-25

See the detailed result >

AT5G08340.1

Model type
Protein coding
Short Description
Nucleotidylyl transferase superfamily protein
Computational Description
Nucleotidylyl transferase superfamily protein; FUNCTIONS IN: FMN adenylyltransferase activity; INVOLVED IN: riboflavin biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), FAD synthetase (InterPro:IPR015864); BEST Arabidopsis thaliana protein match is: Nucleotidylyl transferase superfamily protein (TAIR:AT5G23330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-81-E11 introduced

  • F14114 - seed::increased size / seed::increased length
  • F28332 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found