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  3. RAFL06-81-H15

RAFL06-81-H15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03805)

full reading [+] show sequence

Nucleotide sequence: RAFL06-81-H15 - full reading 
AAATAACTTA AAGAGTTCAA CAATGGCGAA TCATCCACTA TCTTCTTCTC 
GATCCAACCG ACCTTTTTTC GTCAGATCAC TTGCTGGACA CACCTCAAAT 
CTAATAATTC CTGATGAGTT TTTCACTGCT CACTTAGAGG GTAAAACTGG 
CTTAACGAAA TTGAAACTGA CTTCTGATGC TTCGGATAGA ATCTGGGATG 
TGAGACTGAA CGGCCGGAGA TTCGCCGGCG GCTGGGATGA TTTCTCCGCC 
GCACACTGTC TTCGAGACGA CGACGTTTTG GTTTTCAGAC TCGACGTGAA 
GATGGTTTTC CACGTCACAC CTTCCGGACG CAGTTTCTCA CAGATACGTA 
CATCTTCTAG CTCCGGCGAC TACGACAGTG ATGATGATGA TGATGAAGCA 
GGGGACGATG ATTCAGATTC GAAGAACATT TCGTTGAAGA AGAAATCAAG 
ATTTGAAGCA GAGTCTTCTT CATCGGAAAA ATATTGTCTT CTCGGCCTCA 
CTGCTTCCAA CCTACGCCTA AATCGAGTGA GTTTTACAAA ACATTTTTCG 
AGAGCAAATG GTTTGACGAA GAGATGTTGT ATGATTGATC TAATGAATCT 
AAGTGGGGAA TCATGGACTC TGGGTCTGCG ACACAACAAA AGAACTGGTC 
AGGCTTTTAT CCGTGGACGC TGGAGAAGTT TCTGCCATGC AAATGAGCTG 
AAACCCGGAT CGTTCTACCG GTTTAAGCTT GTCCGGAATG GGACAAGGCC 
TTTGCTACAA TTGTGTTTTA AAGTTATTCC ACAAGGAAAC TGTTCCAATT 
CCAAAGCAAA TGGAAAAGCT AATGTTTCTG AAAAGTATAG CAGGGAAGAT 
GGGAGTGCTT CAACGAAGCA GAACAAGTTT CTGACAGTAA CCTTGAAGCA 
TTACATGATC CAGTCAGGGC AACTTCGTCT CCGGAGATCA TTTGTGAGGG 
AGAACGGGAT CAAGGAGGCT GAAGAGATAA TTCTAGTGGA CAAAAATGGA 
GTAGAGTGGC CATCCTATGT ATCTTCTTCC AAACAACGAA GAGAGTTTTA 
CATGGCACAT GGTTGGATTA GGTTTTGTGA AGCCAATAAG TTAAAGACGG 
GAGAGACCTT CACGTTGGAG TTTGTTCGAG GAGAAGGCAC AACTCCTATG 
CTCAAGTTCT GCTCCGAGGC CAAGATAGAG CAAGAAGAGG CTCCAGAAGA 
GAGGGGGACT CCGTTACCAA AGAGAGCTCG AGTGTCTGCA GAAGTAGGAC 
ACTCTCGTCG CACTCAGGCA CCAAACAAAT CCAGTGACGA TCCAAAAATC 
TTGCAGCGCA AGCAACCACT TCAACCCTGC TCATTCTCTG ATCAAGCGAA 
AAAGGTGAAA CAGAGTATTG TAAACATTCT AACTGGTATA AAACGGTTTC 
GGTCAGAGCT TGAGTTAAAG GAGCGGAATT TAGAAGCTGC GCTGCTGGAA 
ATCGACGCCT TAGGGGATAA AGTATCGGAA ATCAACAAAA TCCTCAAGTA 
ATCATCAAGT CTAGAAGGGA AGTGAAGATT AGGAAATGGA ACATGAACTT 
TTGCAAATCT TGTTAGTATC TGCCATCTGG AACTCGTTCA ACAATCAAGA 
CAAGTAGTTT CTTTAGTAAA TGATATATGA TTTACGTGTT TGTGAAAATC 
GAAACTCTGT AGTAAAGCTG ATTTCTAAAT AGCCTTTGGA CGTGAGATTG 
TTTAAAGGGA TCAGTTTGAT TGTCTAACGA TAAGATGTGT GCTTGTGGGA 
TGATTGGTAG GTAGTAGAAA AGTGAATTGA GAATCCAAAA AAAATAATAA 
TTAAGGTCAA AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT4G31620.1 [+] show detail - Transcriptional factor B3 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPfam Transcriptional factor B3 7.9e-12
HMMPfam Transcriptional factor B3 1.6e-15
HMMPfam Transcriptional factor B3 1.2e-19
Gene3D no description 8.4e-10
ProfileScan Transcriptional factor B3 11.378
ProfileScan Transcriptional factor B3 11.899
ProfileScan Transcriptional factor B3 14.113

See the detailed result >

AT4G31620.1

Model type
Protein coding
Short Description
Transcriptional factor B3 family protein
Computational Description
Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT4G31615.1); Has 320 Blast hits to 174 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 320; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-81-H15 introduced

  • F01124 - seed::decreased size / seed::decreased length
  • F10712 - Specific phenotypes were NOT observed.
  • F19835 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found