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  3. RAFL06-81-H15

RAFL06-81-H15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03805)

full reading [+] show sequence

Nucleotide sequence: RAFL06-81-H15 - full reading
AAATAACTTA AAGAGTTCAA CAATGGCGAA TCATCCACTA TCTTCTTCTC 
GATCCAACCG ACCTTTTTTC GTCAGATCAC TTGCTGGACA CACCTCAAAT
CTAATAATTC CTGATGAGTT TTTCACTGCT CACTTAGAGG GTAAAACTGG
CTTAACGAAA TTGAAACTGA CTTCTGATGC TTCGGATAGA ATCTGGGATG
TGAGACTGAA CGGCCGGAGA TTCGCCGGCG GCTGGGATGA TTTCTCCGCC
GCACACTGTC TTCGAGACGA CGACGTTTTG GTTTTCAGAC TCGACGTGAA
GATGGTTTTC CACGTCACAC CTTCCGGACG CAGTTTCTCA CAGATACGTA
CATCTTCTAG CTCCGGCGAC TACGACAGTG ATGATGATGA TGATGAAGCA
GGGGACGATG ATTCAGATTC GAAGAACATT TCGTTGAAGA AGAAATCAAG
ATTTGAAGCA GAGTCTTCTT CATCGGAAAA ATATTGTCTT CTCGGCCTCA
CTGCTTCCAA CCTACGCCTA AATCGAGTGA GTTTTACAAA ACATTTTTCG
AGAGCAAATG GTTTGACGAA GAGATGTTGT ATGATTGATC TAATGAATCT
AAGTGGGGAA TCATGGACTC TGGGTCTGCG ACACAACAAA AGAACTGGTC
AGGCTTTTAT CCGTGGACGC TGGAGAAGTT TCTGCCATGC AAATGAGCTG
AAACCCGGAT CGTTCTACCG GTTTAAGCTT GTCCGGAATG GGACAAGGCC
TTTGCTACAA TTGTGTTTTA AAGTTATTCC ACAAGGAAAC TGTTCCAATT
CCAAAGCAAA TGGAAAAGCT AATGTTTCTG AAAAGTATAG CAGGGAAGAT
GGGAGTGCTT CAACGAAGCA GAACAAGTTT CTGACAGTAA CCTTGAAGCA
TTACATGATC CAGTCAGGGC AACTTCGTCT CCGGAGATCA TTTGTGAGGG
AGAACGGGAT CAAGGAGGCT GAAGAGATAA TTCTAGTGGA CAAAAATGGA
GTAGAGTGGC CATCCTATGT ATCTTCTTCC AAACAACGAA GAGAGTTTTA
CATGGCACAT GGTTGGATTA GGTTTTGTGA AGCCAATAAG TTAAAGACGG
GAGAGACCTT CACGTTGGAG TTTGTTCGAG GAGAAGGCAC AACTCCTATG
CTCAAGTTCT GCTCCGAGGC CAAGATAGAG CAAGAAGAGG CTCCAGAAGA
GAGGGGGACT CCGTTACCAA AGAGAGCTCG AGTGTCTGCA GAAGTAGGAC
ACTCTCGTCG CACTCAGGCA CCAAACAAAT CCAGTGACGA TCCAAAAATC
TTGCAGCGCA AGCAACCACT TCAACCCTGC TCATTCTCTG ATCAAGCGAA
AAAGGTGAAA CAGAGTATTG TAAACATTCT AACTGGTATA AAACGGTTTC
GGTCAGAGCT TGAGTTAAAG GAGCGGAATT TAGAAGCTGC GCTGCTGGAA
ATCGACGCCT TAGGGGATAA AGTATCGGAA ATCAACAAAA TCCTCAAGTA
ATCATCAAGT CTAGAAGGGA AGTGAAGATT AGGAAATGGA ACATGAACTT
TTGCAAATCT TGTTAGTATC TGCCATCTGG AACTCGTTCA ACAATCAAGA
CAAGTAGTTT CTTTAGTAAA TGATATATGA TTTACGTGTT TGTGAAAATC
GAAACTCTGT AGTAAAGCTG ATTTCTAAAT AGCCTTTGGA CGTGAGATTG
TTTAAAGGGA TCAGTTTGAT TGTCTAACGA TAAGATGTGT GCTTGTGGGA
TGATTGGTAG GTAGTAGAAA AGTGAATTGA GAATCCAAAA AAAATAATAA
TTAAGGTCAA AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT4G31620.1 [+] show detail - Transcriptional factor B3 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
HMMPfam Transcriptional factor B3 0.0000000000079
HMMPfam Transcriptional factor B3 0.0000000000000016
HMMPfam Transcriptional factor B3 1.2e-19
Gene3D no description 0.00000000084
ProfileScan Transcriptional factor B3 11.378
ProfileScan Transcriptional factor B3 11.899
ProfileScan Transcriptional factor B3 14.113

See the detailed result >

AT4G31620.1

Model type
Protein coding
Short Description
Transcriptional factor B3 family protein
Computational Description
Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT4G31615.1); Has 320 Blast hits to 174 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 320; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-81-H15 introduced

  • F01124 - seed::decreased size / seed::decreased length
  • F10712 - Specific phenotypes were NOT observed.
  • F19835 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found