1. Home
  2. Full-length cDNAs
  3. RAFL06-81-H23

RAFL06-81-H23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07702)

full reading [+] show sequence

Nucleotide sequence: RAFL06-81-H23 - full reading 
TTTTCAGTAT TTACAAGAGA AGGTGCAAAA GTATGAAGGA TCGTATCCAG 
GTTGGAGTCA GGAACCAACA AAGTTGACGC CATGGAGGAA TAATCATTGG 
CGAGTTCAAA GTTTGGGGAA CCACCCAGTA GCTATAAATA ATGGATCTGG 
TCCAGGGATA CCTTTTCCTG GAAAGTTTGA AGACAACACT GTGACTTCGA 
CACCTGCAAT TATTGCAGAA CCGCAAATCC CGATTGAATC TGACAAAGCA 
AGAGCTATAA CCGGCATATC GATTGAAAGT CAACCTGAGT TAGACGACAA 
AGGATTACCA CCACTACAAC CAATTCTTCC AATGGTACAA GGCGAACAAG 
CTAATGAATG TCCTGCAACT AGTGATGGGC TAGGCCAAAG TAATGACCTG 
GTTATTGAAG GTGGAACCAT TAGCATCTCT AGTGCCTACT CGCATGAGTT 
ATTGAGCTCA TTAACACAAG CACTCCAGAA TGCAGGCATT GATCTGTCGC 
AAGCAAAGCT TTCTGTGCAG ATCGATCTTG GGAAGCGAGC CAATCAAGGT 
CTAACTCATG AAGAGCCATC AAGTAAGAAT CCATTATCAT ATGATACGCA 
AGGAAGGGAT TCAAGCGTTG AGGAAGAATC TGAACATTCT CACAAGCGGA 
TGAAAACACT GTGACATTTC TCTCTCAGGC TCCACGGCGC TGGAATATAT 
AAATGTATTG ACAGATTCCT TGTATCGTGT ACATTGTTCG GCTTCTAGGG 
GTTCCTATAG TACTCGTTAA GATAAACTTT GGTTAGTAGA TTCTGCGTTT 
TTTTGTGGTT CTGAGTTTGT ATCATCTTCT GCATCATTCA TGTAACCTAT 
CAAATATGAT CTCTTGTGGT TTCAAGTTAT TGCATCATTT TTTTCCGAAA 
AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT1G69010.1 [+] show detail - BES1-interacting Myc-like protein 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT1G69010.1

Model type
Protein coding
Short Description
BES1-interacting Myc-like protein 2
Computational Description
BES1-interacting Myc-like protein 2 (BIM2); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: dTDP-rhamnose biosynthetic process, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G08130.3); Has 2743 Blast hits to 2732 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 63; Plants - 2453; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-81-H23 introduced

  • F11121 - Specific phenotypes were NOT observed.
  • F16230 - seed::increased size / seed::increased length
  • F16745 - Specific phenotypes were NOT observed.
  • F21809 - Specific phenotypes were NOT observed.
  • F26215 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found