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  3. RAFL06-81-I06

RAFL06-81-I06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03806)

full reading [+] show sequence

Nucleotide sequence: RAFL06-81-I06 - full reading 
ATCAAAATTT GAGAGAGAAA TCAAATGGAA GTAGAAATGC ATGGTGATGT 
CTCCAAATGG GAAGGCTACG CTGACTGGAG AAACAAAGCC GCCTTGAGAG 
GCCGTCACGG CGGAATGCTC GCCGCCTCCT TCGTCTTGGC GGTGGAGATA 
TTGGAGAATC TAGCGTTTTT AGCGAACGCA AGCAACTTGG TGTTGTATCT 
CAAGAACTTC ATGCACATGT CTCTAGCCAG ATCGTCGAGT GAAGTGACCA 
CTTTCATGGC CACAGCCTTC CTTCTCGCTC TCCTCGGTGG CTTCCTTGCT 
GACGCCTTCT TCTCCACATT CGTCATTTTC CTCATCTCCG CCTCCATCGA 
GTTTCTGGGA CTTATCCTGC TCACAATCCA AGCCCGGCGT CCGTCCTTAA 
TGCCGCCGCC ATGCAAGAGC TCTGCCGCAT TGCGATGCGA GGTCGTTGGT 
GGTTCGAAGG CGGCGTTTCT GTTTGTGGGA CTATATCTAG TGTCTCTAGG 
AATCGGAGGG ATAAAAGGGT CATTACCGTC ACACGGAGCA GAGCAATTCG 
ACGAGGGCAC GCCCAAAGGT CGAAAACAAA GATCCACATT CTTCAACTAC 
TATGTGTTCT GTCTCTCATG TGGAGCACTT GTGGCCGTGA CGTTCGTTGT 
CTGGATCGAG GACAACAAAG GCTGGGAGTG GGGATTTGGA GTCTCCACCA 
TCTCTATATT TCTCTCCATT CTTGTCTTTC TATTAGGTTC GAGGTTTTAT 
AAAAACAAAA TCCCTCGTGG TAGTCCTCTT ACCACAATCT TTAAGGTTCT 
TCTCGCAGCT TCCATAGTTA GTTGCTCGAG TAAAACTTCG AGTAATCACT 
TTACTTCCAG AGAAGTTCAA TCAGAACATG AAGAAAAGAC GCCTTCTCAG 
TCACTTACCA ATAGCTTGAC ATGTCTAAAC AAAGCAATAG AGGGGAAAAC 
ACACCATATT TGGCTCGAAT GCACGGTCCA ACAAGTAGAA GACGTGAAGA 
TTGTGCTAAA AATGCTTCCA ATATTTGGTT GCACCATAAT GCTCAATTGC 
TGCTTAGCTC AGCTTTCTAC TTACTCTGTC CACCAAGCTG CAACGATGAA 
CAGAAAGATC GTTAACTTCA ATGTTCCTTC AGCTTCTTTA CCGGTTTTTC 
CGGTTGTTTT CATGCTGATT CTTGCTCCAA CCTATGACCA TCTGATTATC 
CCATTCGCAA GAAAAGTAAC CAAATCCGAA ATTGGTATCA CTCATTTGCA 
AAGAATCGGT GTAGGCTTAG TCCTTTCGAT AGTAGCAATG GCAGTGGCTG 
CTTTAGTCGA GTTAAAGCGG AAGCAAGTGG CTAGAGAAGC TGGATTACTT 
GACTCTGAAG AAACTTTACC AATCACTTTT CTGTGGATTG CTCTTCAGTA 
TCTGTTTCTA GGATCAGCTG ATCTGTTCAC ACTAGCTGGA TTGCTAGAGT 
TTTTCTTCAC AGAAGCACCT TCTTCTATGA GATCATTGGC TACATCGCTC 
TCATGGGCTT CTTTGGCATT AGGGTATTAT CTAAGCTCGG TGATGGTGCC 
GATAGTGAAC AGAGTAACTA AGAGTGCTGG ACAAAGCCCA TGGCTTGGAG 
AAAAACTTAA CCGTAACAGA CTAGACTTGT TTTATTGGCT CATGTGTGTC 
CTAAGTGTTG TTAACTTCTT GCACTATCTC TTCTGGGCAA AGCGTTACAA 
GTATATCTCA ACTGGTTCAA TAAGTTGATA TGATATACAT AACCTCTTTA 
ATAGATAGAA TAAACAATCA ATAGAGAAAG AAGATTAGTG ATGTCGACTT 
TGGAGAAAGA ACGCCAATAA TACCATGAAA AGTTCAAAAA AAAAAAAAAA 
A

Gene models with high sequence identity

  1. AT1G27040.1 [+] show detail - Major facilitator superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Oligopeptide transporter 3.1e-103
HMMPanther NITRATE TRANSPORTER (NTL1) 0
HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 0
superfamily Major facilitator superfamily, general substrate transporter 4.6e-20

See the detailed result >

AT1G27040.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: nitrate transporter 1:2 (TAIR:AT1G69850.1); Has 5753 Blast hits to 5637 proteins in 1030 species: Archae - 0; Bacteria - 2265; Metazoa - 487; Fungi - 395; Plants - 2179; Viruses - 0; Other Eukaryotes - 427 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-81-I06 introduced

  • F06736 - Specific phenotypes were NOT observed.
  • F11648 - Specific phenotypes were NOT observed.
  • F25024 - seed::increased size

Mutant lines with disrupted or induced

5 mutant lines found