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  3. RAFL06-81-K17

RAFL06-81-K17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17248)

full reading [+] show sequence

Nucleotide sequence: RAFL06-81-K17 - full reading 
GTCCTCTTCT TCTATATCCC TTTTTATCTC TTCGCAGCTT TCTCTCCTCT 
CTCAGATCTA TACTCTCTTC TCCTTCACAA TCGTTCGTTT TATCCTCTCC 
ATCGGATTCG TCAGATATCT TCGATTTCTC GTCGTTTCAT CGGTTCCAGG 
TCAAATCCAG GGATTTGATC GTTGGTAAGC TATCTTTCAG CAAACATGCA 
TGGTTATGAA GATGACCTTG ATGAGGAAGC TGGGTATGAT GACTATTACA 
GCGGTGATGA GGATGAGTAT GAAGATGAGG AAGAGGAGGA TGAAGAACCT 
CCTAAGGAAG AATTGGAATT TCTTGAGTCA CGCCAAAAGT TGAAGGAATC 
AATTCGGAAG AAAATGGGAA ATGGAAGTGC TAATGCTCAA TCTTCACAAG 
AGAGAAGAAG AAAACTTCCT TATAACGACT TTGGTTCTTT CTTTGGTCCT 
TCACGGCCTG TTATTTCCTC AAGGGTTATA CAAGAAAGCA AATCCTTGCT 
TGAAAACGAG CTACGTAAAA TGTCGAATTC GAGCCAAACT AAGAAAAGAC 
CAGTTCCGAC GAATGGTTCA GGCTCTAAGA ATGTGTCACA AGAGAAGCGA 
CCTAAAGTTG TGAATGAGGT GAGAAGGAAA GTTGAGACTC TTAAGGATAC 
AAGAGACTAT TCGTTTTTGT TTTCCGATGA CGCGGAGCTT CCTGTTCCGA 
AGAAGGAATC TCTTTCACGA AGTGGCTCTT TTCCTAATTC TGAGGCTCGA 
TCTGCTCAAT TATCATCGAG GCCCAAACAA TCATCAGGTA TCAATGGTAG 
AACTGCTCAC AGTCCCCATC GTGAGGAGAA GAGACCTGTT TCAGCGAATG 
GACATTCAAG ACCGTCTTCC TCGGGCAGTC AAATGAATCA TTCAAGACCG 
TCTTCCTCTG GCAGTAAAAT GAATCATTCA AGACCGGCTA CCTCGGGCAG 
CCAAATGCCA AATTCAAGAC CAGCTTCCTC TGGCAGCCAA ATGCAGTCGA 
GAGCTGTCTC AGGCTCAGGG CGACCTGCTT CCTCAGGCAG CCAGATGCAA 
AATTCAAGAC CACAAAATTC AAGACCAGCT TCCGCTGGTA GCCAAATGCA 
GCAAAGGCCT GCGTCCTCAG GCAGCCAAAG GCCTGCGTCC TCAGGCAGCC 
AAAGGCCTGC GTCCTCAGGC AGCCAAAGGC CAGGTTCGTC GACAAACCGT 
CAAGCACCTA TGAGGCCACC AGGTTCAGGT TCCACAATGA ATGGTCAATC 
AGCCAACCGG AATGGCCAAC TGAATTCCAG ATCAGATTCC CGAAGATCAG 
CTCCTGCTAA AGTGCCAGTG GATCATAGGA AACAGATGAG CAGTAGCAAT 
GGAGTTGGTC CTGGTCGGTC AGCGACCAAT GCAAGACCTT TACCTTCTAA 
GAGTTCATTG GAAAGAAAAC CCTCAATCTC GGCGGGAAAG AGTTCTCTTC 
AAAGCCCTCA GAGACCGTCC TCATCAAGAC CAATGTCATC TGATCCTAGG 
CAACGGGTAG TAGAACAGAG AAAGGTTTCT CGTGACATGG CCACACCCCG 
AATGATACCT AAACAATCAG CGCCTACCTC GAAACACCAG ATGATGAGTA 
AACCAGCGCT CAAGAGACCT CCCTCGCGTG ACATAGATCA TGAAAGGAGG 
CTGTTGAAGA AGAAGAAGCC TGCAAGGTCA GAGGATCAAG AAGCATTCGA 
TATGCTTAGA CAGTTATTAC CACCCAAGCG GTTTTCTCGG TATGACGATG 
ATGACATAAA CATGGAAGCA GGCTTTGAAG ATATCCAAAA GGAAGAGAGA 
CGAAGTGCGA GAATCGCAAG GGAGGAAGAT GAAAGAGAAC TTAAGCTCTT 
AGAGGAAGAA GAAAGGAGAG AAAGACTGAA AAAGAATCGG AAGCTGAGCC 
GTTAGAAGAA TCCTTTCTCC TTTGTGTCTT TGTCTTCTTT TAGGACTTTT 
TTAGTGTTTT CTCATTGAAA TCTCTTTGGC CGCTTGAGGC AAAAAAGAGT 
TTGACCTTTT TTTTGTTTTG TGTTTTCAAA TTAAGGATCT TTTTTTTGTT 
CATGGAAAAA AAAAA

Gene models with high sequence identity

  1. AT2G22720.3 [+] show detail - SPT2 chromatin protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Chromatin SPT2 4e-39
Coil coiled-coil 0
HMMPfam Chromatin SPT2 1.1e-27

See the detailed result >

AT2G22720.3

Model type
Protein coding
Short Description
SPT2 chromatin protein
Computational Description
SPT2 chromatin protein; CONTAINS InterPro DOMAIN/s: Chromatin SPT2 (InterPro:IPR013256); BEST Arabidopsis thaliana protein match is: SPT2 chromatin protein (TAIR:AT4G37860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-81-K17 introduced

  • F01936 - Specific phenotypes were NOT observed.
  • F03419 - Specific phenotypes were NOT observed.
  • F28901 - rosette leaf::dark green / rosette leaf::dark green / rosette leaf::present in greater numbers in organism / sporophyte vegetative stage::decreased speed / fruit::decreased length

Mutant lines with disrupted or induced

4 mutant lines found