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RAFL06-81-P04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03816)

full reading [+] show sequence

Nucleotide sequence: RAFL06-81-P04 - full reading 
AACTCAAATT ATGGGGTATA GAAGAAGCTA CGCAATCACA TTTGTAGCCC 
TTGTGGCGGC TCTATGGAGC GTAACAAAAG CACAGCCGAG CAGTTCATGC 
GTGAGCACAC TGACCACTCT CTCTCCGTGC CTCAGCTACA TCACCGGAAA 
CTCAACCACT CCCTCACAGC CTTGCTGTTC TCGGCTCGAC TCTGTCATCA 
AATCTTCGCC GCAGTGCATC TGCTCAGCCG TCAACAGTCC GATCCCAAAC 
ATCGGCCTTA ACATTAACCG CACACAGGCC TTGCAGCTCC CCAATGCCTG 
CAACATTCAG ACGCCTCCCC TCACACAATG CAACGCGGCC ACTGGTCCAA 
CAGCACAGCC TCCCGCACCC TCACCGACGG AAAAGACCCC AGATGTGACA 
CTAACCCCAA CCTCATTGCC GGGTGCTCGT TCAGGAGTTG GAGGTGGTTC 
CAAGACAGTT CCCTCCGTTG GTACCGGCTC GTCCAGCAGG AATGTTGACC 
CCTTGCCGCT GCATTTTCTT ATGTTTGCTG TATTGGTGGT CTGCACTTCT 
TCTTTTCTTT AACCAATTCT GAGAGTTCAT GTATTTGGTA ATTTCATTTC 
ACTTGCTGTG CCAGATTGAT CATAAGCGAG ACATGTTTTT TGTTTGTATT 
GCTCAAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT2G48130.1 [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 6.7e-07
superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 3e-23
HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 9.8e-10
FPrintScan Plant lipid transfer protein/Par allergen 6.1e-06
FPrintScan Plant lipid transfer protein/Par allergen 6.1e-06
FPrintScan Plant lipid transfer protein/Par allergen 6.1e-06
Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 3.4e-06

See the detailed result >

AT2G48130.1

Model type
Protein coding
Short Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Computational Description
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to membrane; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT3G22600.1); Has 1201 Blast hits to 1197 proteins in 63 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 0; Plants - 1190; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-81-P04 introduced

  • F11743 - seed::increased size
  • F21909 - Specific phenotypes were NOT observed.
  • F29606 - seed::increased size / seed::increased length
  • F30338 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

21 mutant lines found