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RAFL06-82-E06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03824)

full reading [+] show sequence

Nucleotide sequence: RAFL06-82-E06 - full reading
ACTTTTTCCA GAAATCTCTC ACTATCGCCA TCGATTTTAG CAGACATTGA 
AGAAGATGGG AGTATTCACA TTCGTATGCA AGAATGGAGG CGGCGCGTGG
AGCGCGAAGC AACACGAAGG AGAACTTGAA TCTTCAGCTT CTTCTACCTA
CGAGCTCCAG CGTAAGCTCG TTCAGGTATC TCTCTCCGCT GATTCCTCCG
GTGGCGTTCA GTCTTCGTTT TCTCTTGTCT CCCCTACCTC CGCCGTATTC
CAGGTAATTG TTGGTGGTGG TGGTGGTGGA GGATTCTCTG CTGGAGGAGC
TGCCTCAAGT GGAGGTGGTG CGGGTGAAGC TGCAGCTGCC CCTAAGGAAG
ATGAGAAGAA GAAAGAAGAA TCAGAAGAGG AAGAAGGAGA CTTCGGATTC
GATCTCTTTG GTTAAGATTG AAATAGTATT TTGGAGGTGT TGGTTTGAGC
TTTCCATTTT TGTGTGGGGT GTTTCTTCCA TTGTCAAGTG TGATATGCTA
CACTGCTTTC AATTATATTT CGTGAGTAAT GACAAGTTTC TCTTTCGATC
CAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT4G25890.1 [+] show detail - 60S acidic ribosomal protein family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN P3 2.8e-76
HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 2.8e-76
HMMPfam Ribosomal protein 60S 4.5e-08

See the detailed result >

AT4G25890.1

Model type
Protein coding
Short Description
60S acidic ribosomal protein family
Computational Description
60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G57290.3); Has 643 Blast hits to 642 proteins in 155 species: Archae - 0; Bacteria - 8; Metazoa - 276; Fungi - 74; Plants - 217; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-82-E06 introduced

  • F05722 - rosette leaf::increased size / cauline leaf::increased size / stem::increased thickness / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism / stem::coiled
  • F10429 - Specific phenotypes were NOT observed.
  • F10737 - Specific phenotypes were NOT observed.
  • F11510 - seed::increased length
  • F25636 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found