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RAFL06-82-E06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03824)

full reading [+] show sequence

Nucleotide sequence: RAFL06-82-E06 - full reading 
ACTTTTTCCA GAAATCTCTC ACTATCGCCA TCGATTTTAG CAGACATTGA 
AGAAGATGGG AGTATTCACA TTCGTATGCA AGAATGGAGG CGGCGCGTGG 
AGCGCGAAGC AACACGAAGG AGAACTTGAA TCTTCAGCTT CTTCTACCTA 
CGAGCTCCAG CGTAAGCTCG TTCAGGTATC TCTCTCCGCT GATTCCTCCG 
GTGGCGTTCA GTCTTCGTTT TCTCTTGTCT CCCCTACCTC CGCCGTATTC 
CAGGTAATTG TTGGTGGTGG TGGTGGTGGA GGATTCTCTG CTGGAGGAGC 
TGCCTCAAGT GGAGGTGGTG CGGGTGAAGC TGCAGCTGCC CCTAAGGAAG 
ATGAGAAGAA GAAAGAAGAA TCAGAAGAGG AAGAAGGAGA CTTCGGATTC 
GATCTCTTTG GTTAAGATTG AAATAGTATT TTGGAGGTGT TGGTTTGAGC 
TTTCCATTTT TGTGTGGGGT GTTTCTTCCA TTGTCAAGTG TGATATGCTA 
CACTGCTTTC AATTATATTT CGTGAGTAAT GACAAGTTTC TCTTTCGATC 
CAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT4G25890.1 [+] show detail - 60S acidic ribosomal protein family
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN P3 2.8e-76
HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 2.8e-76
HMMPfam Ribosomal protein 60S 0.000000045

See the detailed result >

AT4G25890.1

Model type
Protein coding
Short Description
60S acidic ribosomal protein family
Computational Description
60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G57290.3); Has 643 Blast hits to 642 proteins in 155 species: Archae - 0; Bacteria - 8; Metazoa - 276; Fungi - 74; Plants - 217; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-82-E06 introduced

  • F05722 - rosette leaf::increased size / cauline leaf::increased size / stem::increased thickness / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism / stem::coiled
  • F10429 - Specific phenotypes were NOT observed.
  • F10737 - Specific phenotypes were NOT observed.
  • F11510 - seed::increased length
  • F25636 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found