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RAFL06-82-F02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03825)

full reading [+] show sequence

Nucleotide sequence: RAFL06-82-F02 - full reading 
GTTTGGAGAT AAGAAGTGGG AACTTGAATG GCTTCCTTAT CCACTTCCGT 
TGTAGCTTCG GCTTCGTCGC GTTTATGGAA TCCTGCTGCC TCCAACGGCA 
AGATTTGCGT TCCTTCTGCT TCGCTTTCTC TGCGTACGGG TTGTAGACGG 
AGTTCGTCCT CTCTCACTTC TTCCGCTTCT TCGCAATTGC TTCATTGCTC 
GTTTCTCTCG TCGCCTGTTT CCCTAGCGTC TCCATTTTCT GGTTTGTCCA 
TTGCGTTTGA TCTCAGCAGT CAAACTAGTG GACTGAATGG CCAGAGACGC 
AGAGGCCTTG TGGTTAGAGC TGGAAAAGCT GCTCTGTGTC AAACTAAGAG 
AAGCAGATCA AGAAAATCTC TAGCTAGGAC TCATGGTTTC CGTAGAAGGA 
TGAGGACCAC TAGCGGTAGA GCAACCATAA AGCGTCGACG TGCCAAGGGA 
CGTTGGAACC TCTGTCCCAA GTCCAACCCT AGCAGCGGCA AACGGGCTTG 
AAGTTTGTTT CTCTCTTCAC TCTATCTGTA ATCTTGTTTC ATGTGCTTTT 
TTTCCACCAG AAGATACAAT GAGAAACATG GTTCGTTGAG CTCTTTTCTG 
CGTTTTAACT CTCTTGCATC CTTGATTCGT TTATAAATCA ATGTTCTTGG 
AATCCAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT1G29070.1 [+] show detail - Ribosomal protein L34
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Ribosomal protein L34 2.5e-10
HMMTigr Ribosomal protein L34 0.00220000021756082
BlastProDom Ribosomal protein L34 0

See the detailed result >

AT1G29070.1

Model type
Protein coding
Short Description
Ribosomal protein L34
Computational Description
Ribosomal protein L34; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34 (InterPro:IPR000271); Has 615 Blast hits to 615 proteins in 261 species: Archae - 0; Bacteria - 556; Metazoa - 0; Fungi - 11; Plants - 33; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-82-F02 introduced

  • F09005 - seed::increased size / seed::increased length
  • F11050 - Specific phenotypes were NOT observed.
  • F13044 - Specific phenotypes were NOT observed.
  • F21040 - Specific phenotypes were NOT observed.
  • F27302 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found