1. Home
  2. Full-length cDNAs
  3. RAFL06-82-G14

RAFL06-82-G14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03829)

full reading [+] show sequence

Nucleotide sequence: RAFL06-82-G14 - full reading 
AATTAGTTAG AGTTTAGAGA AACAGAAAAC TAAAGAAAAA AAATATGCAA 
TCGGCGAAAC AGAAGATAAG CGATATGGCT AGTACAGCCA AGGAGAAGAT 
GGTGATATGT CAAGCAAAAG CTGATGAGAA GGCAGAGCGG GCGATGGCGA 
GGACGAAAGA GGAGAAAGAG ATAGCGCACC AACGGAGAAA GGCGAAGGAA 
GCAGAAGCGA ATATGGATAT GCACATGGCT AAAGCGGCTC ATGCGGAAGA 
CAAGCTTATG GCTAAGCAAT CTCACTACCA TGTTACTGAT CATGGTCCCC 
ACGTGCCTCA ACAAGCGCCT GTACCGGCTC CCGCACCGGT TATGGGACAC 
GGTTACGGGC ATAATCCTAC CGGAGTTACC TCAGTGCCTC CTCAGACCTA 
TCATCCGACT TATCCTCCGA CGGGACATCA TAATCATCAT CACTACTAAT 
CCGACCTACT ATCTTTTTAA AATAAAAAAA AATAACCTGA TTATACGTGT 
GGGGCCTTTA GTGGTTTTCT TAGTTCTTAG GCATGTGCTT AAAATTAAGT 
GATTAAGCGT TGAGTTGATG TTTGCAACTT TGCGTACACG TTTGTTGATA 
AATATTTTGG TTATTCCATG CACTATCTTG TATGTCAAGA GCGTGCGCGA 
CTCACGACAT CACTTCCATT TGACTTTCTG AGTATATCAT TCATTTAATA 
AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT1G32560.1 [+] show detail - Late embryogenesis abundant protein, group 1 protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Late embryogenesis abundant protein, group 1 5.9e-31
BlastProDom Late embryogenesis abundant protein, group 1 5e-31
Coil coiled-coil 0

See the detailed result >

AT1G32560.1

Model type
Protein coding
Short Description
Late embryogenesis abundant protein, group 1 protein
Computational Description
Late embryogenesis abundant protein, group 1 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development, embryo development ending in seed dormancy; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 1 (InterPro:IPR005513); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein, group 1 protein (TAIR:AT2G35300.1); Has 218 Blast hits to 218 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 47; Fungi - 0; Plants - 166; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-82-G14 introduced

  • F07548 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found