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  3. RAFL06-82-N05

RAFL06-82-N05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07713)

full reading [+] show sequence

Nucleotide sequence: RAFL06-82-N05 - full reading 
GGTGAGTGAA GACCATCAAA AATTGCAGAA AATAGGCTTA ATCTGAATCT 
CTTCTCCTCC GTCGAAGTTT TGAATTCTCT CTGGTTCTCC AATTCTCCTC 
TCGAGCTGCC TTAAGCTTCG CATTTACGTT TACGTTATGC ACGAATGAGA 
TCATCGTAGA TCGTGATTGA AGAAGCGAGA GATAAATTAG GAGAGCGAAG 
ATGAGCGAGG GCCAGAAGTT CCAGTTGGGA ACAATCGGCG CTTTGAGTTT 
GTCCGTTGTG TCATCTGTCT CGATTGTGAT CTGTAACAAA GCGCTTATTA 
GCACCCTTGG CTTCACATTC GCGACTACTT TGACAAGTTG GCATCTTTTG 
GTCACATTTT GTTCCCTTCA TGTGGCATTA TGGATGAAGA TGTTCGAACA 
CAAGCCTTTT GATCCACGAG CTGTGATGGG ATTTGGCATA TTGAATGGGA 
TATCCATAGG ACTATTGAAC CTCAGCCTGG GCTTTAATTC TGTCGGTTTT 
TACCAGATGA CTAAACTAGC TATCATCCCC TGCACTGTTC TCTTGGAGAC 
CCTCTTCTTC AGGAAAAAGT TCAGTCGAAA AATCCAGTTT TCATTAACCA 
TCCTTCTCCT TGGTGTTGGA ATTGCAACCG TCACAGATCT TCAACTTAAT 
ATGCTGGGTT CTGTCTTGTC GCTGCTGGCT GTTGTCACAA CTTGTGTTGC 
TCAAATTATG ACAAATACCA TCCAGAAGAA GTTCAAAGTT TCATCCACGC 
AGCTTCTGTA TCAGTCTTGC CCATATCAAG CAATCACTCT TTTCGTCACT 
GGGCCATTTT TAGATGGGCT CCTAACCAAT CAGAACGTGT TTGCTTTCAA 
GTACACTTCT CAAGTAGTGT TCTTCATCGT CCTGTCTTGC CTCATATCAG 
TCTCTGTAAA CTTCAGCACA TTTCTTGTCA TTGGAAAAAC ATCTCCTGTC 
ACATATCAGG TTCTAGGACA TCTCAAAACA TGCCTGGTTC TAGCATTTGG 
CTATGTGTTG CTGCGAGACC CATTCGACTG GCGCAACATT CTCGGTATTC 
TAGTGGCTGT GATTGGAATG GTTGTTTATT CCTATTACTG CTCGATTGAG 
ACTCAGCAGA AGGCAAGTGA AACCTCAACT CAGTTGCCTC AGATGAAAGA 
GAGCGAGAAG GATCCGCTAA TAGCAGCTGA AAATGGAAGC GGAGTGTTAT 
CAGATGGCGG CGGGGGAGTG CAGCAAAAGA CGGTGGCTCC TGTATGGAAC 
TCAAATAAAG ATTTTCAAGC CTAAAAGCTT TGATCATCGC TATTTTTTTA 
TATAATATCA AACTCTCTTT GTATTGTCCC CAAAAAAACA CAAACTTTTT 
AATTTCTCTT TTTTTTTTTT TTTTTTGTTC CCTTTTTAAA TATGCATAGC 
AGAGAAGTAG GGGAGACTGA AAAATCAACA AACCTTCCAC ACAAAAAAAA 
AAAAAAAA

Gene models with high sequence identity

  1. AT1G06890.1 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
    E-value: 0; Score: 99.79

 

InterPro Scan Digest

Program Description E-value
HMMPanther SOLUTE CARRIER FAMILY 35 1.2e-95
HMMPfam Protein of unknown function DUF250 4e-33
superfamily Multidrug resistance efflux transporter EmrE 2.5e-06
superfamily Multidrug resistance efflux transporter EmrE 1e-05

See the detailed result >

AT1G06890.1

Model type
Protein coding
Short Description
nodulin MtN21 /EamA-like transporter family protein
Computational Description
nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2); Has 2654 Blast hits to 2649 proteins in 293 species: Archae - 2; Bacteria - 105; Metazoa - 662; Fungi - 435; Plants - 1177; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-82-N05 introduced

  • F25115 - Specific phenotypes were NOT observed.
  • F27247 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found