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  3. RAFL06-82-N05

RAFL06-82-N05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07713)

full reading [+] show sequence

Nucleotide sequence: RAFL06-82-N05 - full reading
GGTGAGTGAA GACCATCAAA AATTGCAGAA AATAGGCTTA ATCTGAATCT 
CTTCTCCTCC GTCGAAGTTT TGAATTCTCT CTGGTTCTCC AATTCTCCTC
TCGAGCTGCC TTAAGCTTCG CATTTACGTT TACGTTATGC ACGAATGAGA
TCATCGTAGA TCGTGATTGA AGAAGCGAGA GATAAATTAG GAGAGCGAAG
ATGAGCGAGG GCCAGAAGTT CCAGTTGGGA ACAATCGGCG CTTTGAGTTT
GTCCGTTGTG TCATCTGTCT CGATTGTGAT CTGTAACAAA GCGCTTATTA
GCACCCTTGG CTTCACATTC GCGACTACTT TGACAAGTTG GCATCTTTTG
GTCACATTTT GTTCCCTTCA TGTGGCATTA TGGATGAAGA TGTTCGAACA
CAAGCCTTTT GATCCACGAG CTGTGATGGG ATTTGGCATA TTGAATGGGA
TATCCATAGG ACTATTGAAC CTCAGCCTGG GCTTTAATTC TGTCGGTTTT
TACCAGATGA CTAAACTAGC TATCATCCCC TGCACTGTTC TCTTGGAGAC
CCTCTTCTTC AGGAAAAAGT TCAGTCGAAA AATCCAGTTT TCATTAACCA
TCCTTCTCCT TGGTGTTGGA ATTGCAACCG TCACAGATCT TCAACTTAAT
ATGCTGGGTT CTGTCTTGTC GCTGCTGGCT GTTGTCACAA CTTGTGTTGC
TCAAATTATG ACAAATACCA TCCAGAAGAA GTTCAAAGTT TCATCCACGC
AGCTTCTGTA TCAGTCTTGC CCATATCAAG CAATCACTCT TTTCGTCACT
GGGCCATTTT TAGATGGGCT CCTAACCAAT CAGAACGTGT TTGCTTTCAA
GTACACTTCT CAAGTAGTGT TCTTCATCGT CCTGTCTTGC CTCATATCAG
TCTCTGTAAA CTTCAGCACA TTTCTTGTCA TTGGAAAAAC ATCTCCTGTC
ACATATCAGG TTCTAGGACA TCTCAAAACA TGCCTGGTTC TAGCATTTGG
CTATGTGTTG CTGCGAGACC CATTCGACTG GCGCAACATT CTCGGTATTC
TAGTGGCTGT GATTGGAATG GTTGTTTATT CCTATTACTG CTCGATTGAG
ACTCAGCAGA AGGCAAGTGA AACCTCAACT CAGTTGCCTC AGATGAAAGA
GAGCGAGAAG GATCCGCTAA TAGCAGCTGA AAATGGAAGC GGAGTGTTAT
CAGATGGCGG CGGGGGAGTG CAGCAAAAGA CGGTGGCTCC TGTATGGAAC
TCAAATAAAG ATTTTCAAGC CTAAAAGCTT TGATCATCGC TATTTTTTTA
TATAATATCA AACTCTCTTT GTATTGTCCC CAAAAAAACA CAAACTTTTT
AATTTCTCTT TTTTTTTTTT TTTTTTGTTC CCTTTTTAAA TATGCATAGC
AGAGAAGTAG GGGAGACTGA AAAATCAACA AACCTTCCAC ACAAAAAAAA
AAAAAAAA

Gene models with high sequence identity

  1. AT1G06890.1 [+] show detail - nodulin MtN21 /EamA-like transporter family protein
    E-value: 0; Score: 99.79

 

InterPro Scan Digest

Program Description E-value
HMMPanther SOLUTE CARRIER FAMILY 35 1.2e-95
HMMPfam Protein of unknown function DUF250 4e-33
superfamily Multidrug resistance efflux transporter EmrE 0.0000025
superfamily Multidrug resistance efflux transporter EmrE 0.00001

See the detailed result >

AT1G06890.1

Model type
Protein coding
Short Description
nodulin MtN21 /EamA-like transporter family protein
Computational Description
nodulin MtN21 /EamA-like transporter family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: Nucleotide/sugar transporter family protein (TAIR:AT2G30460.2); Has 2654 Blast hits to 2649 proteins in 293 species: Archae - 2; Bacteria - 105; Metazoa - 662; Fungi - 435; Plants - 1177; Viruses - 0; Other Eukaryotes - 273 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-82-N05 introduced

  • F25115 - Specific phenotypes were NOT observed.
  • F27247 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found