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  3. RAFL06-82-N16

RAFL06-82-N16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17255)

full reading [+] show sequence

Nucleotide sequence: RAFL06-82-N16 - full reading 
TGGAGTTGAA TTATGTTTAT CTGATTATTA TTCAGACCGA ACACGAAGAA 
ACAAAAATTC AACAAAAACA AAGACAAAGT TTCGTTTTAG CTTAAAGGTT 
CCAGATTTCG AAAAAGCTCT CTTTTTTTTT CTCCTTCGTG TTACACAACC 
ATTTCTAGAT ATCATTTTGG TGATTAAGTT ATTTAAGAAA TGGCTGATCA 
TTTGAGTTTA TGTACCGATC GTCTCATAAC ATCTGAGAGC TTGGACTCAG 
AGAAAGATTC AGATTCTTCA GGAGAAAGTT CTTACCGGCC TCAAGGCACA 
GACTTGGCTT CTTCATCTGT GAATGAAACT GAGGTTCCTA GAGAGTACTA 
CGCGGTTGCG GATGAGGAAG AACCTCTTCT CCAATCTGTT GAGTGTCGTA 
TTTGCCAAGA GGAAGATAGT ACTAAGAACC TTGAAGCTCC TTGTGCTTGT 
AATGGTAGTT TAAAGTATGC TCACCGCAAG TGTGTTCAGC GTTGGTGTAA 
TGAGAAAGGC GACATAACCT GTGAAATATG TCACCAGCCT TATCAACATG 
GATACACTGC ACCTCCGCCT CCTCCTCCTG ATGAAACTAT AATTCACATC 
GGTGACGATT GGGAGAACGG AGTTCCGTTG GACTTGACCG ACCCGCGCAT 
TCTGGCAATG GCGGCTGCAG AACGTCATTT CTTGGAAGCA GACTATGATG 
AATATTCTGA GAATAACTCA AGCGGAGCTG CCTTTTGTCG CTCTGCTGCT 
CTCATCCTAA TGGCACTTTT ACTGTTACGA GATGCGCTAA ATCTCACAAC 
GAACCCAGAC GACGAGGACG ATCCAACTGC CTTCTTCTCT CTATTCCTTC 
TTCGTGCTGC TGGTTTTCTC CTCCCATGTT ACATCATGGC ATGGGCCATC 
GGTATACTAC AACGTCGAAG ACAAAGACAG GAAGCAGCGG CTCTAGCTGC 
CGCAGAAGTT ACTTTCATGA TACACGGTGG TGGGCCTCAA CGCAGAGGAC 
TGCACTTTGC TGTAGCACCG CAGCCGCCGA TATCCAATGT CCCAACACCA 
GTTTGATCCT TACCGGCAAT GATTCTCCGT TAAGGCTATT AGATAAAACC 
TTGAACTTGG TTATAAGAAC TCTACCTACT TATGCTTCTT CAAATGTTAT 
TATCTTCCTC TTATGTTTGT GTTATCTGAA TCTGTTAAAT GTCTACTTCG 
GCTCTCAAAT GTTTTACAAA GAGCTCTCAC GGTATACTAT GTACAGTCTT 
ATTATTATCA TATGATTATA TAAGTATTAT ATTTTTAAAA AAAAAA

Gene models with high sequence identity

  1. AT3G47550.3 [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 0.0000000000003
Coil coiled-coil 0
superfamily RING/U-box 0.0000039
HMMPanther MEMBRANE ASSOCIATED RING FINGER 1,8 0.000000000006
HMMPanther MEMBRANE ASSOCIATED RING FINGER 0.000000000006
HMMPfam Protein of unknown function DUF3675 3.4e-44
HMMPfam Zinc finger, C3HC4 RING-type 0.0000001
ProfileScan Zinc finger, RING-CH-type 21.873
HMMSmart Zinc finger, RING-CH-type 5.7e-21

See the detailed result >

AT3G47550.3

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to salt stress; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3675 (InterPro:IPR022143), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G62460.1); Has 1874 Blast hits to 1869 proteins in 210 species: Archae - 0; Bacteria - 0; Metazoa - 852; Fungi - 126; Plants - 623; Viruses - 31; Other Eukaryotes - 242 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-82-N16 introduced

  • F02733 - seed::decreased width
  • F06243 - Specific phenotypes were NOT observed.
  • F16430 - Specific phenotypes were NOT observed.
  • F17229 - Specific phenotypes were NOT observed.
  • F19351 - seed::decreased size
  • F25144 - Specific phenotypes were NOT observed.
  • F25208 - seed::increased size
  • F29726 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

10 mutant lines found