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  3. RAFL06-82-P06

RAFL06-82-P06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03841)

full reading [+] show sequence

Nucleotide sequence: RAFL06-82-P06 - full reading 
ACCCATCAAG TCCCAATTCC CAACACTGTC ACTCAAAAAG AATCTTCAAA 
CAATGAATCT CAACGTCGTC GTTTTACTCC TACTCCTTCT AATCTCATCC 
GCCACGTGTT GTCCGCCGTC AGACCGCCGT GCACTTCTAG CTTTCCGATC 
AGCTCTTCAC GAGCCTTACC TCGGCATTTT CAACTCATGG ACAGGCCAAG 
ACTGTTGCCA CAACTGGTAC GGTATTAGCT GCGACTCGCT CACTCACCGA 
GTCGCCGACA TAAATCTCCG CGGCGAGTCA GAAGATCCAA TCTTCGAACG 
AGCTCACCGA ACCGGTTACA TGACCGGACA CATCTCCGCC TCGATATGTG 
AGCTCACTCG TCTCTCCGCC ATTACAATCG CCGATTGGAA AGGTATCTCC 
GGCGAAATCC CTAAATGTAT CACTCGTCTT CCTTTTCTCC GTACACTCGA 
CTTAATCGGA AACCAAATCT CCGGTGGGAT TCCATACGAC ATCGGAAGAT 
TAAACCGGTT AGCTGTTTTA AACGTAGCCG ATAACCGAAT CTCCGGTTCA 
ATTCCAAAAT CATTAACCAA TCTCTCTAGC TTAATGCATT TAGATCTCCG 
TAACAACTTA ATCTCCGGTG TAATCCCGTC GGACGTCGGA AGATTAAAAA 
TGCTCAGCCG TGCGTTATTA TCCGGTAACC GAATAACCGG TCGGATCCCA 
GAATCATTAA CCAATATCTA CCGGTTAGCT GACGTGGATC TCTCCGGTAA 
CCAACTCTAC GGTACAATCC CACCGTCTCT AGGACGTATG TCGGTACTAG 
CCACACTTAA CCTCGACGGA AACAAAATCT CCGGCGAGAT ACCTCAAACT 
CTGATGACGT CGTCGGTGAT GAATCTGAAT TTGAGCCGGA ACTTGCTACA 
AGGGAAGATA CCTGAAGGGT TTGGACCAAG GTCTTACTTC ACAGTTCTTG 
ATTTGTCGTA TAATAATCTG AAAGGACCAA TACCGAGATC GATCTCAGGT 
GCGTCGTTTA TTGGTCATTT GGATCTTAGC CATAACCATC TCTGTGGGAG 
GATTCCGGTA GGTTCACCGT TTGATCATCT TGAAGCGGCG TCGTTTATGT 
TTAACGACTG TCTTTGTGGT AAACCTTTAA GAGCTTGCTT GAAAAATTGA 
TTTTTATATG TAATTTGAGT TTTTTCATTA GAGACATTAT TATATTTATG 
GTTATGCATT TTATAAAAAA AAGATTTAAA ATTGTATGCT ACGTTTAGTT 
GAATTATGGG ATGATTAACA AAATATATAA ACTTCCAAAA AAAAAAAAAA 
A

Gene models with high sequence identity

  1. AT3G20820.1 [+] show detail - Leucine-rich repeat (LRR) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily L domain-like 2.8e-71
HMMPfam Leucine-rich repeat 0.89
HMMPfam Leucine-rich repeat 0.24
HMMPfam Leucine-rich repeat 0.32
HMMPfam Leucine-rich repeat 0.26
HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 2.5e-10
HMMPanther LRR RECEPTOR-LIKE KINASE 5e-74
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 5e-74
Gene3D no description 4e-68
Gene3D no description 5e-07

See the detailed result >

AT3G20820.1

Model type
Protein coding
Short Description
Leucine-rich repeat (LRR) family protein
Computational Description
Leucine-rich repeat (LRR) family protein; INVOLVED IN: signal transduction, defense response; LOCATED IN: apoplast, cell wall, chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G12940.1); Has 70868 Blast hits to 23934 proteins in 998 species: Archae - 25; Bacteria - 4468; Metazoa - 12756; Fungi - 677; Plants - 48104; Viruses - 0; Other Eukaryotes - 4838 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-82-P06 introduced

  • F03921 - Specific phenotypes were NOT observed.
  • F18517 - Specific phenotypes were NOT observed.
  • F18518 - Specific phenotypes were NOT observed.
  • F19741 - Specific phenotypes were NOT observed.
  • F28920 - seed::increased size / seed::increased length
  • F29245 - rosette leaf::increased size / rosette leaf::upturned / rosette leaf::abnormal / rosette leaf::increased width / cauline leaf::decreased size / stem::abnormal / stem::abnormal
  • F29437 - seed::increased length / seed::decreased width

Mutant lines with disrupted or induced

8 mutant lines found