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  3. RAFL06-83-A13

RAFL06-83-A13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07715)

full reading [+] show sequence

Nucleotide sequence: RAFL06-83-A13 - full reading 
AAACCCGTAC GGCCTCTTTA GAGTTTCACC TTTGTGTCTC TCTGAAACTG 
CAACAAAGCT TGAAGCGATA GGGTTTATTC AAGCTTCACT CAAACCAGTC 
GCTAAATTTC GACATCTTTA TTCACATATC TATAGATTCA AGCTTTGTGA 
TTTGCCATTC GGGTTTCAGA TTCGTGTTGG TAATTCAATT TCTGAATCCT 
CTGCTCCTAA AGAGAAGAAT CTGAGATCAG CAATGGAAAC GGATCTCAAT 
GATTATACTG TCATTAAGGA AGGAGAAGCT GAGGTTCTTA TGCACAAGAA 
GAACCAAGTC TTCTTCAACA AAGCTCAGGT TAACAATAGG GACATGTCTA 
TTGCTGTGCT AAGGGCATTT ATAATCAAAC GCAAGCAAGA GCATGAGGCT 
ATGTTATCTA AAAGAGCTAG ATCATCTGGG AAAGTGGTTG AGAAGGATGT 
CTCTGAAACT TCCAAGGAAG AAACTCCTAC TGAAAACGGT GACGATAATG 
GAAAAACCAA TGGAGAACAC GAAGTAACAA CTCAGGATGG ACCAAAGGAA 
GCTGCTAAGA CCGCATATGA ATCTGCACGA AGGGAACTCA AACCACCAAG 
AGTGCTTGAG GCCCTGTCAG CTTCAGGGCT ACGGGCTTTG AGGTATGCTC 
GTGAAGTTGA AGGAATTGGT CAAGTTGTGG CTTTAGATAA TGACCCAGCA 
TCGGTTGAAG CCTGCCAGAG AAACATTAAG TTCAATGGTT TGATGTCTAC 
TTCAAAGGTG GAGTCACATC TTACTGATGC TCGTGTTCAC ATGCTCAGCC 
ACCCAAAAGA TTTTGATGTG GTTGATCTTG ACCCATATGG TGCGCCGTCT 
ATTTTCCTTG ACTCAGCTGT TCAATCAGTT GCCGATGGTG GTTTGCTGAT 
GTGTACAGCA ACTGACATGG CAGTGTTATG TGGAGCTAAC GGCGAGGTCT 
GCTATTCCAA ATATGGCTCT TATCCACTGA AAGGGAAATA TTGTCATGAG 
ATGGCTTTGA GGATCCTCCT CGCCAGCATC GAGAGCCATG CAAATCGCTA 
CAAGCGGTAT ATTGTTCCTG TTCTATCGGT CCAAATGGAT TTCTACGTTC 
GTGTTTTTGT CCGCGTCTAC ACTTCGGCGA GTGCAATGAA GAATACTCCA 
CTAAAGCTCT CATATGTCTA CCAATGCATT GGTTGTGATT CCTTTCATCT 
TCAGTCTGTT GGAAGATCTC TCCCTAAGAA TAACAGTGTG AGATATCTAC 
CTGGAGTTGG TCCTGTTGTT CCTCAGGATT GCACTCATTG TGGAAAGAAA 
TATAATATGG GTGGACCAAT ATGGTCTGCT CCAATCCACG ATCAAGAATG 
GGTGAATTCG ATACTAAACG GTGTTAAATC CATGAAAGAC AGATATCCTG 
CTTACGACCG AATTTGCGCT GTTCTTACCA CAATCTCAGA GGAATTGCCA 
GATGTTCCTC TCTTTTTGAG CCTGCATAGT CTCTCTGCAA CGCTAAAATG 
TACTTCACCA TCAGCTGCTT TGTTTCGATC AGCGGTAATC AATGCAAAGT 
ACCGTGTCTC TGGGTCCCAT GTGAACCCGC TTGGGATTAA AACTGATGCT 
CCAATGGAGA TTATCTGGGA CATCATGCGG TGCTGGGTGA AAAATCATCC 
CATAAAGCCG CAATCACCTG AACATCCTGG AAGTGTGATT CTATCTAAAG 
AACCATCTCA TCAGGCTGAC TTTTCGCGCC ACGTCGGTTC GCTTAGTAAA 
GCACAGGCGA AGAAAGTAGC CCGGTTTCTA CCAAACCCAG AGAAGCATTG 
GGGTCCCAAG ATAAGGGCAG GTCGTACAAT CACAAGCAAA CATGTATCGC 
TTCTTGGTCA TGAAGCAGTA AACGGTCATC TCAATAACAA TCATAAAGAA 
GCAGGAGACG AAGAAGAAGA AGAAGAAGAA GAAGAGCCCG AAGAAGATAT 
CATCGAGGGT GAGCCAGAGC TCAAACGCCA AAAGACAACA GAAGATTTTG 
CCTCAACATC ATAGGGCGAA TGTTTACACA AGAATTTTAT ATTTTTGTTT 
GCAAAAGATT TTCTCTTTTC TTTTCTTAAA CATTTGTTAT CACAGTTCTG 
CGTTTTTGAT CCTAGCACTT CACCATTTTT GCAGACTTCT ACAACAAACA 
ACTTATAAGT CTCTATTGGA TTCTTCAGAT CTGTTAGAGA CTATTTAAAA 
AAACCTTGTA ATGTGTAAGT TTTCATCAGT AACACTTTTC TATGAATCTT 
TAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT5G15810.1 [+] show detail - N2,N2-dimethylguanosine tRNA methyltransferase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily S-adenosyl-L-methionine-dependent methyltrans 7.2e-13
HMMPfam N2,N2-dimethylguanosine tRNA methyltransferase 2e-117
Gene3D no description 7.4e-05
HMMPanther N2,N2-dimethylguanosine tRNA methyltransferase 9.9e-133
Coil coiled-coil 0
HMMTigr N2,N2-dimethylguanosine tRNA methyltransferase 5.4e-86

See the detailed result >

AT5G15810.1

Model type
Protein coding
Short Description
N2,N2-dimethylguanosine tRNA methyltransferase
Computational Description
N2,N2-dimethylguanosine tRNA methyltransferase; FUNCTIONS IN: RNA binding, tRNA (guanine-N2-)-methyltransferase activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: N2,N2-dimethylguanosine tRNA methyltransferase (InterPro:IPR002905); BEST Arabidopsis thaliana protein match is: N2,N2-dimethylguanosine tRNA methyltransferase (TAIR:AT3G02320.1); Has 1017 Blast hits to 963 proteins in 359 species: Archae - 255; Bacteria - 70; Metazoa - 198; Fungi - 150; Plants - 103; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-83-A13 introduced

  • F23434 - seed::increased size
  • F24514 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found