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RAFL06-83-A22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03842)

full reading [+] show sequence

Nucleotide sequence: RAFL06-83-A22 - full reading 
GAGACTCTAT TTACTCGCCG GCGGAAGAAC AAAATGGCGG GAAGAGCGAT 
TTTCTCTGTA TCTTGTTCAT CTACTCCTTC CTTGTGTATC CCTTATTCAA 
CTGCTTCGTT TTCATCGATG AATCGACTGG CGCTCCCCGC CGTCCGGATT 
TCTCCCCGAA CCAACAGATT TCCCAGGATT CACTGCTCTA TGTCTGCTAA 
CGACATCAAA GCGGGAACCA ATATCGAAGT CGATGGTGCT CCTTGGCGTG 
TTCTTGAGTT TCTTCATGTT AAACCAGGAA AAGGTGCGGC ATTTGTGAGA 
ACTAAGATCA GGAACTATGT GAATGGTAGC ACAGTCGAGA GAACATTTCG 
TGCTGGAATT TCTGTTGAGG AAGCTAATAT ATATAAAGAA ACCAAACAAT 
TCACATACAA AGATGGGTCT CAGTTTGTTT TCATGGATTT GACCACATAC 
GAAGAAACAC GTCTTAACGA ATCTGATATG GGTGAGAAGA CGAAATGGTT 
GAAAGAAGGA ATGGATTGCA TTTTGCTCTA TTGGAAAGAC AAGGTTATCG 
ATTTCGATCT ACCGATTACA GTTAAGCTAA AAGTGGTTGA CGTTGATCCT 
GGCCTTCGCG GTGATACTGT GCAAGGTGGA TCAAAACCGG CGACAATGGA 
AACGGGTGCA ATAGTTGCTG TACCACTCTT TATTAACGTC GGTGAAGAGA 
TATTTGTGGA CACAAGAACT GGTGCATACA TGAACCGAGC GTGATCCGGG 
TCTACTACAC CTAGTTAATT GGGTCGTTAA CAACAAGGCA ATGATACATC 
TTTTTTGTAT ATGAGAATGT TCGAATCCGG GGACACATGT TTGTTTTTCT 
GAACATCGAG AGACAATTTT TCGATTAAAT AAATTTATAT ACAAAAAAAA 
AAAAAAAA

Gene models with high sequence identity

  1. AT3G08740.1 [+] show detail - elongation factor P (EF-P) family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Translation elongation factor P/YeiP, conserved site 0
HMMPfam Translation elongation factor, KOW-like 1.7e-25
HMMPfam Elongation factor P, C-terminal 5.4e-24
HMMPfam Translation elongation factor P/YeiP, central 4.6e-19
HMMTigr Translation elongation factor P 1e-94
Gene3D Translation protein SH3-like, subgroup 5.1e-18
Gene3D Nucleic acid-binding, OB-fold 1.8e-14
Gene3D Nucleic acid-binding, OB-fold 2.6e-17
HAMAP Translation elongation factor P 34.782
superfamily Nucleic acid-binding, OB-fold-like 2.4e-20
superfamily Translation protein SH3-like 9.2e-20
superfamily Nucleic acid-binding, OB-fold-like 1.5e-17
HMMSmart Elongation factor P, C-terminal 2.3e-29

See the detailed result >

AT3G08740.1

Model type
Protein coding
Short Description
elongation factor P (EF-P) family protein
Computational Description
elongation factor P (EF-P) family protein; FUNCTIONS IN: translation elongation factor activity; INVOLVED IN: translational elongation; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Translation elongation factor P (InterPro:IPR011768), Translation elongation factor P/YeiP, conserved site (InterPro:IPR013852), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Translation elongation factor, KOW-like (InterPro:IPR013185), Translation protein SH3-like, subgroup (InterPro:IPR014722), Elongation factor P, C-terminal (InterPro:IPR015365), Translation protein SH3-like (InterPro:IPR008991), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Translation elongation factor P/YeiP, central (InterPro:IPR001059), Translation elongation factor P/YeiP (InterPro:IPR020599); BEST Arabidopsis thaliana protein match is: elongation factor P (EF-P) family protein (TAIR:AT4G26310.1); Has 10499 Blast hits to 10498 proteins in 2700 species: Archae - 4; Bacteria - 7892; Metazoa - 1; Fungi - 0; Plants - 81; Viruses - 0; Other Eukaryotes - 2521 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-83-A22 introduced

  • F01648 - Specific phenotypes were NOT observed.
  • F12915 - Specific phenotypes were NOT observed.
  • F15613 - Specific phenotypes were NOT observed.
  • F18138 - Specific phenotypes were NOT observed.
  • F18210 - Specific phenotypes were NOT observed.
  • F25543 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

6 mutant lines found