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RAFL06-83-B22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03844)

full reading [+] show sequence

Nucleotide sequence: RAFL06-83-B22 - full reading 
GGAGACCAAG AGTGCGAAGT AGCTCTCTGT CTTTCGAAGC AGAAGTGAGA 
CTTTGACGAC AACAGTGGGA GGAACTATGA GTTCTTGTGT TGTGACGACA 
AGCTGTTTCT ATACAATTTC AGATTCTAGT ATACGTTTGA AATCCCCCAA 
GCTCCTCAAT CTGAGTAACC AGCAGAGAAG ACGCTCTCTT AGGTCTCGAG 
GTGGTTTAAA GGTTGAAGCT TACTACGGTC TAAAGACACC TCCTTATCCA 
CTTGATGCTT TGGAGCCGTA TATGAGTAGA AGAACACTAG AAGTGCATTG 
GGGAAAACAC CATCGAGGTT ATGTAGATAA TCTGAATAAA CAGTTAGGGA 
AAGATGATAG ACTCTATGGA TACACCATGG AAGAGCTTAT CAAGGCTACA 
TACAACAACG GGAATCCTTT ACCCGAGTTC AACAACGCTG CACAGGTCTA 
TAACCATGAT TTCTTCTGGG AGTCGATGCA ACCTGGTGGT GGAGACACGC 
CTCAAAAGGG TGTTCTTGAG CAGATTGATA AGGATTTTGG TTCTTTCACA 
AATTTTAGAG AAAAGTTCAC TAATGCAGCT CTTACTCAGT TTGGTTCTGG 
ATGGGTCTGG CTTGTCTTAA AGAGGGAAGA GAGAAGGCTT GAGGTGGTCA 
AAACCTCAAA CGCCATTAAC CCACTCGTGT GGGACGATAT TCCAATCATC 
TGCGTGGATG TGTGGGAGCA CTCTTATTAT CTGGACTACA AGAACGACAG 
GGCTAAGTAT ATAAACACAT TTCTGAACCA CTTGGTGTCG TGGAACGCTG 
CCATGAGTCG GATGGCCCGT GCAGAAGCGT TTGTGAATCT TGGTGAACCC 
AACATCCCAA TCGCTTAAGC TAAACACAAC TCCTTGGAAA CTTGGGCAGT 
CTCATTTTTG CAAACAGAGG TCTCAAGTCC CAAGTCCCAA CCAACAAAAC 
AAGAGTTGCT TTCTGAATGT GACCCATCTT TTTGTTCTGT GTAATTTAGC 
GACAGTTTTC TCTTCTTTTG CCTTTTGAGA GACTCTCTAG CTTTAAGATC 
ATCAGTGAGC CCTGTATGGT GACAGTAATG TTAGTGACGC AATTAACCCT 
TATTAAGTTA TAATAAAACG AAGGCTGGCT CACGTGACCC GCACGTGACT 
GAGAGTATCA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT5G23310.1 [+] show detail - Fe superoxide dismutase 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Manganese/iron superoxide dismutase, C-terminal 2.2e-40
superfamily Manganese/iron superoxide dismutase, N-terminal 5.8e-33
FPrintScan Manganese/iron superoxide dismutase 1.4e-18
FPrintScan Manganese/iron superoxide dismutase 1.4e-18
FPrintScan Manganese/iron superoxide dismutase 1.4e-18
FPrintScan Manganese/iron superoxide dismutase 1.4e-18
FPrintScan Manganese/iron superoxide dismutase 1.4e-18
HMMPanther SUPEROXIDE DISMUTASE [FE] 3.9e-180
HMMPanther Manganese/iron superoxide dismutase 3.9e-180
PatternScan Manganese/iron superoxide dismutase, binding site 0
HMMPfam Manganese/iron superoxide dismutase, C-terminal 3.7e-37
HMMPfam Manganese/iron superoxide dismutase, N-terminal 7.3e-23

See the detailed result >

AT5G23310.1

Model type
Protein coding
Short Description
Fe superoxide dismutase 3
Curator Summary
Fe superoxide dismutase
Computational Description
Fe superoxide dismutase 3 (FSD3); FUNCTIONS IN: superoxide dismutase activity; INVOLVED IN: removal of superoxide radicals; LOCATED IN: chloroplast, nucleoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Manganese/iron superoxide dismutase, N-terminal (InterPro:IPR019831), Manganese/iron superoxide dismutase (InterPro:IPR001189), Manganese/iron superoxide dismutase, C-terminal (InterPro:IPR019832), Manganese/iron superoxide dismutase, binding site (InterPro:IPR019833); BEST Arabidopsis thaliana protein match is: Fe superoxide dismutase 2 (TAIR:AT5G51100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-83-B22 introduced

  • F02721 - Specific phenotypes were NOT observed.
  • F08835 - Specific phenotypes were NOT observed.
  • F21203 - Specific phenotypes were NOT observed.
  • F28141 - rosette leaf::dark green / stem::abnormal / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

5 mutant lines found