1. Home
  2. Full-length cDNAs
  3. RAFL06-83-E02

RAFL06-83-E02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03847)

full reading [+] show sequence

Nucleotide sequence: RAFL06-83-E02 - full reading 
ACATGAAAAC TAAACACACG TACACAAGAA ACCCCAAAAC ATTTTGCCTA 
GAAAGTTGTT TAAATTACCT CTTAAACCTT AAGAAATCAT ATCCAGAAAC 
TCAATGGATC AACAAGGGAT GGTCAAGAAA AGACTAGCCG TTCTCGTCGG 
CTGCAACTAC CCTAACACAA GGAACGAGCT TCACGGTTGC ATCAATGATG 
TTCTAGCCAT GAAAGAAACT ATTTTGTCAC GTTTCGGATT CAAACAAGAC 
GACATTGAGG TGCTAACGGA CGAGCCAGAA TCAAAGGTAA AGCCGACAGG 
TGCCAACATC AAGGCTGCTC TACGTAGGAT GGTGGATAAA GCTCAAGCCG 
GATCTGGAGA CATCTTGTTC TTCCACTACA GTGGCCATGG AACTCGTATT 
CCTTCGGTTA AATCTGCTCA TCCTTTTAAA CAAGACGAAG CTATTGTTCC 
TTGTGATTTC AATCTCATCA CAGATGTTGA TTTCCGAGAA TTGGTCAATC 
AACTTCCTAA AGGAACAAGC TTTACCATGA TCTCTGATTC TTGCCATAGT 
GGTGGTCTCA TCGACAAGGA GAAAGAACAG ATCGGACCCT CTTCGGTCTC 
CAGCAACATA TCTCCGGCTA TTGAGACAAC GAACAAGACT ATAACATCAC 
GTGCCTTGCC CTTCAAGGCA GTCCTTGACC ACTTGAGTTC TCTCACCGGA 
ATTACAACTT CCGACATCGG CACACATCTA CTTGAGCTCT TTGGCCGCGA 
TGCTGGTCTT AAGTTTCGGT TACCGGCAAT GGATCTAATG GATCTTTTGG 
AGACTATGAC GGCCCGTGAA AAACACGTGG ACTCAGGGAT ATTGATGAGC 
GGGTGTCAGG CGGATGAGAC GTCTGCTGAC GTCGGCGTTG GGAACGGGAA 
AGCGTACGGA GCGTTTAGCA ACGCGATTCA AAGGGTGTTG AACGAAAATG 
AAGGTGCCAT GAAGAACAAG CAACTAGTGA TGATGGCAAG GGATGTGCTT 
GAGAGACTAG GGTTTCATCA ACACCCTTGT CTCTACTGCA GCGACCAGAA 
CGCAGACGCG ACGTTCCTTT CTCAACCTTG AATTTTAAAC GTTTGCGTTG 
TTTTCTTTTA TTTGTTTTAT CACGTTTGCC TTTGGGGTTG TTGTAAATTG 
TTAACTGGTG GAATGTGTGT ATTTTCTATT CTCTGTGGTG TACTCTAAAA 
GGAAAAAGGA CATATAAAAC TTGTTTAATA ACATTTATCT TTTTTAATGG 
TAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT5G04200.1 [+] show detail - metacaspase 9
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT5G04200.1

Model type
Protein coding
Short Description
metacaspase 9
Computational Description
metacaspase 9 (MC9); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: apoplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase C14, caspase catalytic (InterPro:IPR011600); BEST Arabidopsis thaliana protein match is: metacaspase 6 (TAIR:AT1G79320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-83-E02 introduced

  • F15311 - Specific phenotypes were NOT observed.
  • F19845 - rosette leaf::increased size / rosette leaf::epinastic / rosette leaf::present in greater numbers in organism / stem::abnormal / cauline leaf::abnormal

Mutant lines with disrupted or induced

3 mutant lines found