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RAFL06-83-E03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03848)

full reading [+] show sequence

Nucleotide sequence: RAFL06-83-E03 - full reading 
ACTTGCATAA ACTAACTTGG TTCTCTTAGA TATTTCTTTA GAGTTAAATA 
ATCATATTCA ATTTTTTTAA AAAGGATGTT AGAAGGGAAA GCAGTAATGG 
GTGATACAGA TATGAAGCAA ACAATGAAGG AAGATGCTCT TAGTTTGGCC 
TCCAAAGCCC TTGATTGCTT TGATGTCACC GAACCTACTC AAATTGCCCG 
TTTCATCAAG AAGGAATTTG ATAGAAGTTA CGGATCGGGG TGGCAGTGCA 
TCGTGGGGAC GCATTTCGGA TCTTTCGTGA CTCATTGCAG TGGCTGCTTC 
ATCCATTTCT CAGTTGGCAG CCTTACCATT TTGCTTTTTA AGGGATCAGT 
CGGTGAACCG GCCCCCCCGG ACCGATGCTC TAGCTAATTT AGACAGTATT 
GTAAAATAAT CAAGTCCTTT TCGATTGATG TAGTGTTAAA GTTAAAGAGT 
ATTCAAGTTC TTTCACTGTA ATATCAATCA TGATTCGTCG TTATGGATGT 
CTTCAATAAC AAGAAAACAC TGCTTTCTTA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT4G27360.1 [+] show detail - Dynein light chain type 1 family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Dynein light chain, type 1/2 1.4e-27
Gene3D Dynein light chain, type 1/2 2.2e-25
HMMPfam Dynein light chain, type 1/2 7.7e-33
HMMPanther Dynein light chain, type 1/2 1.3e-38

See the detailed result >

AT4G27360.1

Model type
Protein coding
Short Description
Dynein light chain type 1 family protein
Computational Description
Dynein light chain type 1 family protein; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: Dynein light chain type 1 family protein (TAIR:AT3G16120.1); Has 1221 Blast hits to 1219 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 628; Fungi - 103; Plants - 253; Viruses - 0; Other Eukaryotes - 237 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-83-E03 introduced

  • F00451 - seed::decreased size / seed::decreased length
  • F01137 - Specific phenotypes were NOT observed.
  • F02001 - Specific phenotypes were NOT observed.
  • F10932 - rosette leaf::decreased size / rosette leaf::decreased width / cauline leaf::abnormal / stem::present in fewer numbers in organism / stem::abnormal / stem internode::decreased length / stem::abnormal
  • F22722 - Specific phenotypes were NOT observed.
  • F22733 - Specific phenotypes were NOT observed.
  • F29038 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found