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  3. RAFL06-83-F21

RAFL06-83-F21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07720)

full reading [+] show sequence

Nucleotide sequence: RAFL06-83-F21 - full reading 
ATCTTCTCAA ACTAAATCAA TTAAAGAGGT TTCTTCTTAT AGAAATGAAT 
TTCTCTTATT CTTCCTTGTC AACTTGGACA ACCCTAATGA CATTGGGTTG 
TCTTCTGCTT CATTCATCCA TTTCCAGTGC TCAGCTAACC CCAACTTTCT 
ATGACAATAC ATGTCCAAGC GTCTTTACCA TCGTACGGGA TACCATAGTA 
AACGAGCTAA GATCGGATCC TCGTATCGCT GCAAGCATCC TTCGTCTTCA 
CTTCCACGAC TGTTTCGTCA ATGGCTGTGA TGCATCGATC CTGTTAGACA 
ACACAACATC CTTTCGAACA GAGAAAGATG CGGCTCCAAA CGCAAACTCG 
GCTCGAGGAT TTCCAGTGAT CGATAGAATG AAAGCAGCAG TAGAGACAGC 
ATGTCCAAGG ACTGTTTCAT GCGCAGATAT ACTTACCATC GCAGCTCAAC 
AAGCTGTAAA TTTGGCAGGA GGTCCTTCTT GGAGGGTTCC TTTGGGGAGA 
AGAGATAGCT TACAAGCATT CTTTGCTCTC GCTAATACAA ATCTTCCCGC 
TCCATTCTTC ACTCTCCCAC AACTTAAGGC CAGTTTTCAA AATGTTGGAC 
TTGACCGTCC CTCTGATCTC GTTGCACTCT CTGGTGGTCA CACATTTGGT 
AAAAACCAGT GCCAATTTAT TATGGATAGA CTATACAACT TTAGCAACAC 
TGGTTTACCC GACCCTACTC TTAATACTAC ATACCTCCAG ACACTTCGTG 
GACAATGTCC CCGCAATGGT AACCAGACCG TCTTAGTTGA TTTCGATCTA 
CGCACACCGA CGGTTTTTGA CAATAAATAC TATGTGAATC TGAAAGAGCT 
AAAGGGACTT ATCCAGACGG ATCAAGAGTT GTTTTCCAGC CCTAATGCCA 
CTGACACAAT CCCCTTGGTG AGAGAATACG CTGATGGCAC TCAAAAATTC 
TTCAATGCTT TTGTGGAAGC AATGAATAGA ATGGGAAACA TTACACCTCT 
CACTGGAACT CAAGGACAAA TCAGACAGAA TTGTAGGGTG GTTAACTCCA 
ACTCGCTGCT ACATGATGTG GTCGAAATCG TTGACTTTGT CAGCTCTATG 
TAACATAACG TTGTCTCGAT ATATGTGGCA ACCAAAAATA TGTTTTATGA 
AATAAAGTGT TCTCAAAATG TTTATGAAGA ACATTTCGTC TGAAAAAAAA 
AAAAAAAA

Gene models with high sequence identity

  1. AT3G32980.1 [+] show detail - Peroxidase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Plant peroxidase 6.4e-68
FPrintScan Plant peroxidase 6.4e-68
FPrintScan Plant peroxidase 6.4e-68
FPrintScan Plant peroxidase 6.4e-68
FPrintScan Plant peroxidase 6.4e-68
FPrintScan Plant peroxidase 6.4e-68
FPrintScan Plant peroxidase 6.4e-68
FPrintScan Plant peroxidase 6.4e-68
FPrintScan Plant peroxidase 6.4e-68
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.2e-34
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.2e-34
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.2e-34
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.2e-34
FPrintScan Haem peroxidase, plant/fungal/bacterial 1.2e-34
ProfileScan Haem peroxidase, plant/fungal/bacterial 81.054
superfamily Haem peroxidase 6e-114
HMMPfam Haem peroxidase, plant/fungal/bacterial 5.4e-72
PatternScan Peroxidases heam-ligand binding site 0
PatternScan Peroxidase, active site 0
Gene3D no description 1.4e-62

See the detailed result >

AT3G32980.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase CB (TAIR:AT3G49120.1); Has 4309 Blast hits to 4278 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 49; Plants - 4212; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-83-F21 introduced

  • F08632 - seed::decreased width
  • F16803 - seed::decreased width

Mutant lines with disrupted or induced

5 mutant lines found