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RAFL06-83-K09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03858)

full reading [+] show sequence

Nucleotide sequence: RAFL06-83-K09 - full reading 
GCTGTATCAT CTTCTTCTTC TACTTCGTCC TCATCATCGT CACATAGATC 
CTCCTTTTTC GTTAATTGGG GAGAGATATA CTTTCTTTTG AGGATCAGAT 
CGTGACAGGG TTTAGCTCAA GGAGAGGGTG AGAAAAAGAA GAAGAAGGTG 
AGAAAAGTGA AGGCAAGGCT TTGAGGATGT CTTTTACAGG AACTCAACAG 
AAATGCAAGG CTTGTGAGAA GACTGTTTAT GCTGTTGAGC TTCTCTCTGC 
TGATGGAGTT GGATATCACA AGTCTTGCTT CAAATGCACT CACTGCAAAA 
GCAGGCTTCA GCTGAGTAGT TACTCATCAA TGGAAGGTGT TTTGTACTGT 
AAGCCTCATT TTGAGCAGCT CTTTAAGGAG AGTGGTAGTT TCAACAAGAA 
CTTTCAGTCA CCTGCAAAAT CGGCTGACAA ATCAACTCCT GAGCTGACAA 
GGACGCCTAG CCGAGTTGCT GGCAGGTTCT CTGGTACACA AGAGAAATGC 
GCCACTTGTA GTAAAACTGT GTATCCTATT GAAAAGGTAA CAGTCGAGAG 
CCAGACATAT CACAAGTCCT GCTTCAAGTG CTCACATGGA GGTTGCCCAA 
TTTCACCTTC CAACTACGCA GCTCTTGAAG GAATCCTGTA CTGCAAGCAC 
CATTTCGCTC AGCTCTTCAA GGAGAAGGGA AGTTACAACC ACTTAATCAA 
ATCCGCTTCC ATCAAACGCT CTGCAGCCGC AGCAGTCGCC GCCGGTGTAC 
CAGCAGCCTC CGTTCCTGAA TCTTAAAATC CAATAATTTC TCCTCTCTAG 
TCTAAAATTT GAAGTTAATG CCAAACTGAT TCAGTTTGAT TTCTCTTTGT 
GAGAGCGTGT GTGTAATCTA TGCTTTGATG TTCTTATTTC CATTGATGTC 
TCCTAAAATT CTATGTTTGT GTGGTGATTT GGTTATCTAT AAAAAGTCTG 
AAACTTTCCT CAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT3G55770.1 [+] show detail - GATA type zinc finger transcription factor family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther TRANSCRIPTION FACTOR L2 6.9e-59
HMMPanther LIM DOMAIN CONTAINING PROTEIN 6.9e-59
HMMSmart Zinc finger, LIM-type 5.4e-13
HMMSmart Zinc finger, LIM-type 1.2e-13
Gene3D Zinc finger, LIM-type 5.2e-21
Gene3D Zinc finger, LIM-type 5.4e-21
superfamily Glucocorticoid receptor-like (DNA-binding dom 2.9e-18
superfamily Glucocorticoid receptor-like (DNA-binding dom 4.3e-16
superfamily Glucocorticoid receptor-like (DNA-binding dom 1.4e-07
superfamily Glucocorticoid receptor-like (DNA-binding dom 2.8e-05
HMMPfam Zinc finger, LIM-type 7.9e-14
HMMPfam Zinc finger, LIM-type 5e-14
PatternScan Zinc finger, LIM-type 0
ProfileScan Zinc finger, LIM-type 13.751
ProfileScan Zinc finger, LIM-type 12.573

See the detailed result >

AT3G55770.1

Model type
Protein coding
Short Description
GATA type zinc finger transcription factor family protein
Computational Description
GATA type zinc finger transcription factor family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, LIM-type (InterPro:IPR001781); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT2G39900.1); Has 5098 Blast hits to 3614 proteins in 193 species: Archae - 0; Bacteria - 0; Metazoa - 4118; Fungi - 82; Plants - 503; Viruses - 0; Other Eukaryotes - 395 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-83-K09 introduced

  • F08318 - Specific phenotypes were NOT observed.
  • F13717 - seed::increased size / seed::increased length
  • F23312 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found