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RAFL06-83-K19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03860)

full reading [+] show sequence

Nucleotide sequence: RAFL06-83-K19 - full reading 
GCTCTTCTCC TTCACGGCGA AGTGACTCAC TTCCATGGAT TCCTCTCTGC 
TCTCGGCGGC TACGGCCGAT ACCTTCAACG GCAATGCGGC GGATCAAATT 
CCTCCTCCGT TACAGCCTCC GGGAACGGAT ATGACTGGAA TTTCCTTCAG 
GGATCAGCTC TGGATCAATT CATACCCTCT TGATCGTAAC TACATCTTCG 
ATTACTTCGC TTTGTCTCCT TTCTACGATA CAACTTGCAA CAATGAGATT 
CTTCGGAGAA GATCCATTCA CCCTCTCGAT CTCTCTCACC TCTCGAAGAT 
GACAGGTCTA GAATATATGT TAACTGATGC TACTGAACCA AACCTGTTCG 
TCTTTCGTAA GCAAAAGAGA GATGGTCCTG AGAAAGTCAC ACCGATGCTA 
ACATATTATA TCTTGGATGG TTCTATTTAC CAAGCTCCTC AGCTTTGTAG 
TGTCTTCGCA GCTCGAGTTA GTCGGACTAT TTATAATATA TCCAAGGCTT 
TCACTGATGC TGCATCGAAA TTGGAGACCA TTAGACAAGT TGATACTGAA 
AACCAGAACG AACCTGCTGA GTCGAAGCCT GCTAGTGAGA CAGTTGATCT 
AAAGGAAATG AAGCGAGTCG ATGTCATTCT TACCTCATTA TATCGCAAGT 
TAGCGCCACC ACCTCCACCC CCACCCTTTC CTGAAGGTTA TGTTAGCCAA 
GAAGCATTAG GAGAAAAGGA AGAGCTTGGA ACACAGGGAG GAGAGTCACA 
ACCGCCTCAA GTTGATCCAA TTATCGATCA AGGTCCTGCT AAAAGAATGA 
AGTTCTAAGC TCATCAAAAT TGTTTCTTCA TCTATGCATG TATAGAATTT 
TTAGGTACTA GCAAAGGCTC TTCTACTTTT TCGCATTGTT TAATCTGAAC 
TCCTTACACA ATTGTTGACA TGATTACTTC TCATAAAGTT TCGCATACGA 
AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT3G21350.1 [+] show detail - RNA polymerase transcriptional regulation mediator-related
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
HMMPfam Mediator complex, subunit Med6 1.6e-39
HMMPIR Mediator complex, subunit Med6, metazoa/plant 2.7e-161
HMMPanther Mediator complex, subunit Med6 3.2e-91

See the detailed result >

AT3G21350.1

Model type
Protein coding
Short Description
RNA polymerase transcriptional regulation mediator-related
Computational Description
MED6; FUNCTIONS IN: RNA polymerase II transcription mediator activity; INVOLVED IN: regulation of transcription from RNA polymerase II promoter; LOCATED IN: mediator complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mediator complex, subunit Med6, metazoa/plant (InterPro:IPR016820), Mediator complex, subunit Med6 (InterPro:IPR007018); Has 344 Blast hits to 344 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 146; Fungi - 139; Plants - 37; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-83-K19 introduced

  • F10002 - rosette leaf::desaturated green / cauline leaf::decreased size / stem::desaturated green / cauline leaf::abnormal / stem::abnormal / stem internode::decreased length
  • F14413 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found