1. Home
  2. Full-length cDNAs
  3. RAFL06-84-B13

RAFL06-84-B13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03868)

full reading [+] show sequence

Nucleotide sequence: RAFL06-84-B13 - full reading 
GACGTGACTC TTCTCTCTCT TCCTCTCCAT CAATGGCGAC CACAAACTCT 
CTCCACCACC ACCACCACTC CTCTCCTTCT TACACACACC ACCGCAACAA 
TCTCCATTGC CAATCTCACT TCGGACCAAC TTCTCTTTCC CTCAAACAAC 
CCACTTCCGC CGCAACATTC TCACTAATCT GCTCTGCTTC TTCCACCTCC 
TCCTCCACCA CCGCCGTATC TGCCGTTTCA ACCACAAACG CCTCCGCCAC 
AACTGCCGAA ACCGCGACCA TATTCGACGT TCTGGAGAAC CATCTCGTCA 
ATCAAAACTT CAGACAAGCC GACGAGGAGA CACGGAGATT ACTCATTCAG 
ATATCCGGAG AAGCCGCCGT GAAACGTGGC TACGTTTTCT TCTCCGAGGT 
GAAAACAATC TCCCCCGAAG ATCTTCAAGC TATCGACAAT CTATGGATTA 
AACACAGTGA TGGTAGATTC GGATACAGCG TGCAACGCAA AATCTGGTTA 
AAAGTGAAGA AAGATTTCAC AAGATTCTTC GTTAAAGTTG AGTGGATGAA 
GCTTCTTGAC ACAGAGGTTG TTCAATACAA TTACAGAGCG TTTCCTGACG 
AATTCAAGTG GGAGCTTAAC GATGAAACGC CTTTAGGACA CTTACCGCTC 
ACAAACGCCT TGAGAGGAAC GCAGCTTCTG AAATGCGTTT TAAGCCATCC 
TGCGTTTGCG ACAGCTGATG ATAACAGTGG AGAAACAGAA GACGAGCTTA 
ACAGAGGTGT TGCGGTGGCT AAGGAACAGG CAGAAGTAGG AGCAGACAAA 
AGAGTGTTTA AAACAAATTA CAGCTTCTGA TGTCTTTCTC CTTCTTTTTT 
TTTTTTTTTA ATATTGATTT TCTGATATTG TGAAAGTATA AACAAATCTC 
TGTAATCATA TCATTAATTA AATCGGATTT CTCTTCAATG TCAGTTCCAT 
TGTGATTATG GATGTATGAA CAAAGCCAGA TCATTAGTTA ATGAACAAAA 
AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT3G59400.1 [+] show detail - enzyme binding;tetrapyrrole binding
    E-value: 0; Score: 99.80

 

InterPro Scan Digest

See the detailed result >

AT3G59400.1

Model type
Protein coding
Short Description
enzyme binding;tetrapyrrole binding
Curator Summary
GUN, genomes uncoupled, is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. Binds to the magnesium chelatase complex and promotes formation of the substrate,a tetrapyrrole signaling molecule. Porphyrin-binding protein that enhances the activity of Mg-chelatase. Although required for chlorophyll accumulation under normal growth conditions, GUN4 is not essential for chlorophyll synthesis.
Computational Description
GENOMES UNCOUPLED 4 (GUN4); FUNCTIONS IN: tetrapyrrole binding, enzyme binding; INVOLVED IN: chlorophyll biosynthetic process, chloroplast-nucleus signaling pathway, positive regulation of catalytic activity; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GUN4-like (InterPro:IPR008629); Has 685 Blast hits to 680 proteins in 101 species: Archae - 0; Bacteria - 474; Metazoa - 4; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 152 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-84-B13 introduced

  • F18940 - Specific phenotypes were NOT observed.
  • F29346 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found