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RAFL06-84-B20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03869)

full reading [+] show sequence

Nucleotide sequence: RAFL06-84-B20 - full reading 
ATCTGTTGGG TCGTTTCTTT GAAATCAAAA AAAAAAAATC TCTGTTTCTC 
TGACACTCTC TCTCTCTGTT TCTACTTTCA AGATTCAAAT TTTTGTTCCC 
CTGATCCACT CGTCTTTGAA TTCTCATCAA GTCTTATATG TTTCTTGCCT 
ACTCTGATCT CTATCGGAAA CCCTAGATCC ATATCTTCTT GACTTGACAC 
TAGTTCACGA ATCACGATCT GCGGTTCCTG AAGCTGGTAA TGCTAGATCC 
CACCGAGAAA GTAATCGATT CAGAATCAAT GGAAAGCAAA CTCACATCAG 
TAGATGCGAT CGAAGAACAC AGCAGCAGTA GCAGTAATGA AGCTATCAGC 
AACGAGAAGA AGAGTTGTGC CATTTGTGGT ACCAGCAAAA CCCCTCTTTG 
GCGAGGCGGT CCTGCCGGTC CCAAGTCGCT TTGTAACGCA TGCGGGATCA 
GAAACAGAAA GAAAAGAAGA ACACTGATCT CAAATAGATC AGAAGATAAG 
AAGAAGAAGA GTCATAACAG AAACCCGAAG TTTGGTGACT CGTTGAAGCA 
GCGATTAATG GAATTGGGGA GAGAAGTGAT GATGCAGCGA TCAACGGCTG 
AGAATCAACG GCGGAATAAG CTTGGCGAAG AAGAGCAAGC CGCCGTGTTA 
CTCATGGCTC TCTCTTATGC TTCTTCCGTT TATGCTTAAC GAATTTTCTG 
GATCTTAAGT TTTAAGGTGA AATAATAATT AATTTTGTAG GATGTGTAAC 
GAATTAATGT GTAATTTTTG TATGCGTTTT TTTGGTGTTG TTTGAATTAA 
CTAAATTTTG AAATTTTTGT ATCTTGTTTA TGTGATCTCT GGTGAAGAAT 
GAATGAATGA ATGAAAGGTC AAAATGATTT TCTTCCGAAA AAAAAGAAAA 
AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT3G06740.1 [+] show detail - GATA transcription factor 15
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Glucocorticoid receptor-like (DNA-binding dom 1.1e-14
HMMSmart Zinc finger, GATA-type 5.5e-14
HMMPfam Zinc finger, GATA-type 2.3e-15
ProfileScan Zinc finger, GATA-type 12.387
PatternScan Zinc finger, GATA-type 0
HMMPanther GATA TRANSCRIPTION FACTOR-RELATED 0.00037
HMMPanther TRANSCRIPTION FACTOR GATA (GATA BINDING FACTO 0.00037
Gene3D Zinc finger, NHR/GATA-type 1.1e-05

See the detailed result >

AT3G06740.1

Model type
Protein coding
Short Description
GATA transcription factor 15
Curator Summary
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational Description
GATA transcription factor 15 (GATA15); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 16 (TAIR:AT5G49300.1); Has 1479 Blast hits to 1431 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 586; Plants - 738; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-84-B20 introduced

  • F08942 - Specific phenotypes were NOT observed.
  • F09301 - rosette leaf::abnormal / cauline leaf::abnormal / rosette leaf::desaturated green / rosette leaf::dark green / rosette leaf::abnormal / rosette leaf::abnormal / cauline leaf::hyponastic / cauline leaf::abnormal / whole plant::decreased height / stem internode::decreased length
  • F13406 - Specific phenotypes were NOT observed.
  • F26448 - rosette leaf::abnormal / sporophyte vegetative stage::decreased speed
  • F26611 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found