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  3. RAFL06-84-C12

RAFL06-84-C12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07730)

full reading [+] show sequence

Nucleotide sequence: RAFL06-84-C12 - full reading 
ATTTTGGGAA CTTTCATCCA TAAACTTCTA TTTTTCTCAT CGCAAACTTG 
AACCGTCGTA ACCCTAAATC GCCATCTTCA TCATCGGCAA ATCGAATCTC 
CGATTATATA TCAAATAGCT TACCAAATCC GACATGACCC AGGCCCTCGT 
TTTCGGAGGA CTATAATGAT CGGACTCTTC GTGTCCCGTC TCGATTGCAT 
GGGGTTTGAG CTATGCCGGA GCTTCGCCGT GGAGTCCGCC GTGGCCGTGT 
TACTGATGCT GTAGCTCCCA ATCAGCTTCC GCAAACACCT ACAGAAAAGA 
AACCGAAGAA GAGTACCGTT AAAGCTCCAA AACCGGTTGC CGGCGGAGTT 
ACAGGAGTTG CAGAGAGGCC GAGGACTAGA TTAGCGGCGA GGAAATTAAA 
GGAGGAAGAT AAAGAGATAC CTCAGGAGAT TCCGGTTGTT GTGCCGTCTA 
AGGATAGCGA TATCGATAAA AACAAGGGTA AAGAGGTAGT CGTTGAAGAA 
GAGAAGAAAG ATATGGCTAT TGGTAATGAT AGTGGTGGCT CTAACAAGGC 
GGCTGCTCAG GAAGAAGAAG GAAATACTGC TCCTTTCCCT GAGAGGGTTC 
AAGTTGGAGG ATCACCACTA TATAAAGTTG AGAGAAAGCT GGGGAAGGGT 
GGTTTTGGAC AAGTATTTGT CGGACGTCGT ATTAGTGGCG GTAATGATCG 
TAGTGCAGGA GCTAGCATCT TGGAGGTTGC TCTAAAGTTT GAGCATAGGA 
GCAGCAAGGG TTGCAACTAT GGTCCTCCAC ATGAGTGGCA GGTTTACAAC 
ACCTTGGGTG GTAGCCATGG AGTCCCTAGA GTACATTTCA AAGGCAGGCA 
AGGAGACTAT TATGTCATGG TTATGGACAT GCTTGGGCCT AGCTTATGGG 
ATTTATGGAA TACTTCAGGG CAAGCAATGT CCTCGGAAAT GGTAGCTTGC 
ATTGCGGTTG AATCACTTTC CATCCTTGAA AAGATGCATG CAAAAGGTTA 
TGTGCATGGG GATGTTAAGC CAGAAAATTT CTTACTCGGC CAGCCTTCAA 
CGTCTCAAGA GAAAAAACTG TTTCTTGTTG ATTTGGGACT AGCTACAAAG 
TGGAGAGAAG GTGGTAGCGG ACAACATGTT GAATATGATC AACGTCCTGA 
TATGTTTAGA GGGACAGTTA GATACGCAAG TGCACATGCT CATTTAGGGA 
GAACTGCTAG CAGAAGGGAT GATCTGGAAT CATTAGCATA TACACTGATC 
TTTCTTCACC GAGGTAGATT GCCATGGCAA GGATATCAGG GAGATAACAA 
GTCATTCCTT GTTTGCAAAA AGAAGATGGC AACATCGCCG GATATGCTTT 
GTTGTTTTTG TCCCCCTCCT TTCAAACAAT TTCTTGAGAT CGTGGTAAAT 
ATGAAATTTG ATGAAGAACC CAACTATGGA AAGTTAGTAT CTCTGTTTCA 
AGACCTCTTG GGCGAAAATC CGGCAATTAG GCCTATAAAC ACAGAGGGTG 
CTCAAAAGAT CATATTCCAA GTTGGCCAGA AGCGAGGTAG GTTGAGCATT 
GGGGAGGAAG AAGAAGATGC CCCTAGGAAA AAGGTCCGTC TAGGAGTCCC 
TGCAACGCAA TGGATATCGA TTTACAATGC CAGGCAACCA ATGAAGCAGA 
GGTATCATTA TAATGTGGCT GATATAAGAC TGGCACAGCA TATTGAGAGA 
GGTATTGCAG ATGGTTTGTT GATAAGCTGT GTATCATCAT GTTCGAATCT 
CTGGGCATTG ATAATGGATG CTGGAACTGG CTTCACGCAC CAAGTCTATG 
AACTCTCTCC TGTATTCTTG CACAAGGAAT GGATTATGGA GCAGTGGGAG 
AAGAACTACT ACATTAGTTC TATTGCTGGT GCAAGCAATG GAAGCTCCTT 
AGTTGTCATG TCAAAAGGTA CGCAGTATAC ACAGCAGTCT TACAAAGTAA 
GCGATTCATT CCCGTTCAAG TGGATAAACA AGAAATGGAG AGAAGGCTTC 
CATGTAACCT CAATGGCAAC AGCTGGAAAT CGATGGGGTG TTGTTATGTC 
CCGCAATTCT GGCTACAGTG AACAGGTTGT GGAACTTGAT TTTCTGTATC 
CAAGTGAAGG CATCCACAGG CGTTGGGATG GTGGATTCAG AATCACATCA 
ACAGCAGCCA CAACCGATCA AGCTGCTCTC ATCCTAAGCA TCCCACGTCG 
TAGACTTGTT GATGAGACAC AAGAGACGTT ACGTACCTCT CAATTCCCCA 
GCACACACGT CAAGGAAAAA TGGGGAAAGA ATCTCTACCT TGCATCGTTA 
AGCTATGGCC GAACTGTATC TTGAGACTTA TTAGTAAAAA CTGTTGAAGG 
ACGAGAGAAA TATGTTTCTA AGTCTCGGCT CCTATTCCTT ATCCAACCCT 
ATGGCCTCTC AGGCTCTGTT GTGCTTCTTC TTTTTTTTCA GTTGAATTGT 
GAAGCAAAAA TGTGGTGATT GTGTTGTTTA TTCCCCCCTT GTGAAGGGGA 
TTGAGCCATA ATCACCAGTT TACCTACACA TTTCCCTCGA AATTGCTATA 
TTTAATTTTT AAATCAAGAA AAGATATTTT TGTCACCAAA TATTCTATAG 
TTGTCCAATT CTGTAACCTA ATTATCGAAT TCATATCAAA AAAAAAAAAA 
AAA

Gene models with high sequence identity

  1. AT3G13670.1 [+] show detail - Protein kinase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
HMMPfam Serine/threonine-protein kinase-like domain 1.6e-24
HMMPanther CASEIN KINASE 5.6e-138
HMMPanther CASEIN KINASE-RELATED 5.6e-138
superfamily Protein kinase-like domain 1.3e-45
ProfileScan Protein kinase, catalytic domain 23.736
HMMSmart Serine/threonine-protein kinase domain 0.0000000000026
Gene3D no description 1.1e-18
Gene3D no description 3.8e-39

See the detailed result >

AT3G13670.1

Model type
Protein coding
Short Description
Protein kinase family protein
Computational Description
Protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase family protein (TAIR:AT2G25760.1); Has 17131 Blast hits to 17075 proteins in 1486 species: Archae - 12; Bacteria - 5943; Metazoa - 4767; Fungi - 1425; Plants - 2358; Viruses - 214; Other Eukaryotes - 2412 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-84-C12 introduced

  • F13235 - seed::increased size / seed::increased length
  • F14833 - Specific phenotypes were NOT observed.
  • F15637 - seed::increased size / seed::increased length
  • F19442 - Specific phenotypes were NOT observed.
  • F24405 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / stem::decreased thickness / whole plant::decreased height
  • F27421 - Specific phenotypes were NOT observed.
  • F28627 - rosette leaf::decreased size / rosette leaf::increased width / stem::decreased thickness / rosette leaf::abnormal / rosette leaf::abnormal / cauline leaf::decreased size / stem::abnormal
  • F29104 - Specific phenotypes were NOT observed.
  • F30013 - rosette leaf::decreased size / rosette leaf::present in fewer numbers in organism / rosette leaf::abnormal / whole plant::decreased height / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

9 mutant lines found