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RAFL06-84-F14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03871)

full reading [+] show sequence

Nucleotide sequence: RAFL06-84-F14 - full reading 
CTCTTTCCCT CTCTCTCTCT CTCCAAACCA GTCCTACTTC TCTCTCTAGA 
AACCTAGGGA AGAAGAAGAA GACGGTGAAG CGAGCGATGT CTTCGGACGA 
CGAAGGAAGA GAGGAGTATC TCTTCAAGAT TGTTGTTATC GGCGACTCTG 
CCGTCGGTAA ATCTAATCTT CTATCTCGTT ACGCACGTAA CGAGTTCAGC 
GCTAACTCCA AGGCGACGAT CGGAGTCGAG TTTCAGACGC AGAGCATGGA 
GATTGAAGGT AAAGAGGTCA AGGCTCAGAT TTGGGACACT GCTGGTCAGG 
AGCGTTTCCG TGCCGTCACT TCCGCTTATT ACCGTGGCGC TGTCGGTGCC 
CTCGTCGTTT ACGACATTAC CCGCCGCACC ACTTTCGAAA GCGTTGGACG 
TTGGCTCGAT CAGCTTAAGA TCCATTCGGA TACGACGGTG GCGAGAATGC 
TGGTGGGGAA CAAGTGTGAT CTAGAAAACA TAAGAGCAGT GAGCGTGGAG 
GAAGGAAAGG CTCTAGCCGA AGAGGAAGGA CTCTTCTTTG TGGAAACATC 
GGCTCTTGAT TCGACTAATG TTAAAACAGC TTTCGAGATG GTGATACTTG 
ATATCTACAA TAACGTGAGC CGTAAGCAAC TCAACTCAGA TACTTATAAA 
GACGAACTCA CCGTGAATCG GGTAAGTCTT GTTAAGGATG ATAACTCTGC 
CTCCAAACAA AGCTCTGGTT TCTCTTGTTG TTCTTCCACT TGATGATATA 
CCACACCAAA ATAATCCTTT TTTATTTCTC ACAACTGTAA CTTTATTATA 
TAAATTTTTG TTTTTTTCTT TGACTCATGG AAGAAAAGAA ATTCATGAAC 
TATAAAAAAA AAAAAAAAA

Gene models with high sequence identity

  1. AT1G05810.1 [+] show detail - RAB GTPase homolog A5E
    E-value: 0; Score: 99.88

 

InterPro Scan Digest

Program Description E-value
HMMSmart Ras small GTPase, Ras type 5.9e-28
HMMSmart Ras small GTPase, Rab type 4.6e-105
HMMSmart Small GTPase, Rho type 1.9e-11
HMMSmart Ran GTPase 0.00022
superfamily P-loop containing nucleoside triphosphate hyd 1.7e-60
ProfileScan Small GTPase 34.267
HMMPfam Ras 1.5e-60
HMMTigr Small GTP-binding protein 1.6e-33
HMMPanther Rab11-related 9.5e-83
HMMPanther RAS-RELATED GTPASE 9.5e-83
Gene3D no description 4.9e-61
FPrintScan Ras GTPase 7.9e-39
FPrintScan Ras GTPase 7.9e-39
FPrintScan Ras GTPase 7.9e-39
FPrintScan Ras GTPase 7.9e-39
FPrintScan Ras GTPase 7.9e-39

See the detailed result >

AT1G05810.1

Model type
Protein coding
Short Description
RAB GTPase homolog A5E
Computational Description
RAB GTPase homolog A5E (RABA5E); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Rab11-related (InterPro:IPR015595); BEST Arabidopsis thaliana protein match is: RAB GTPase homolog A5D (TAIR:AT2G31680.1); Has 27587 Blast hits to 27548 proteins in 749 species: Archae - 23; Bacteria - 136; Metazoa - 14522; Fungi - 3761; Plants - 3260; Viruses - 20; Other Eukaryotes - 5865 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-84-F14 introduced

  • F07121 - whole plant::decreased height / seed::present in fewer numbers in organism / flower::abnormal / stem::abnormal / stem internode::decreased length
  • F07204 - cauline leaf::abnormal

Mutant lines with disrupted or induced

8 mutant lines found