1. Home
  2. Full-length cDNAs
  3. RAFL06-84-G05

RAFL06-84-G05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz87675)

3 prime EST [+] show sequence

Nucleotide sequence: RAFL06-84-G05 - 3 prime EST 
GGAGAAATAA TTGGTAAACT TTTGCGGTAC ATACGGTTTG GGTCAAGTTA 
CAAACGGATA AACCGGTATA GAATACACAG AGTTTTTGAA TTCTCCCATT 
TAAGCTGCAA TTTCTTCGAC CTCCATCCAA TGCATAGCTT GTTGGTCGAT 
ATGTTGGCGT AATTGACTTT TGCGAACCGG ACCACAACCG GGTATCGAGT 
CTTAGGGTCC TGATCAAGCG GGAACAACTG ATCCAAAGTT CTTGAACCAA 
TAGGATTCTC TCCTTACAAT CTTGACCTTA CACCCTCTCT TAGGACCAAT 
CGGTGGTGGC TTGGGTTTGG TGGCAGCTAC CTCCATCCGG AGCAGCGGCA 
GCTGCCGGAG AATCTTTTGA AGAAGAGGAA GCCGGAGCAG GATCTTCGGC 
TGCCCTGA

Gene models with high sequence identity

  1. AT4G28750.1 [+] show detail - Photosystem I reaction centre subunit IV / PsaE protein
    E-value: 0; Score: 97.55

AT4G28750.1

Model type
Protein coding
Short Description
Photosystem I reaction centre subunit IV / PsaE protein
Curator Summary
mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Subunit E of Photosystem I
Computational Description
PSA E1 KNOCKOUT (PSAE-1); FUNCTIONS IN: catalytic activity; INVOLVED IN: response to salt stress; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit IV/PsaE (InterPro:IPR003375), Electron transport accessory protein (InterPro:IPR008990); BEST Arabidopsis thaliana protein match is: photosystem I subunit E-2 (TAIR:AT2G20260.1); Has 449 Blast hits to 449 proteins in 133 species: Archae - 0; Bacteria - 180; Metazoa - 5; Fungi - 0; Plants - 90; Viruses - 3; Other Eukaryotes - 171 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-84-G05 introduced

  • F03626 - Specific phenotypes were NOT observed.
  • F03704 - Specific phenotypes were NOT observed.
  • F03747 - Specific phenotypes were NOT observed.
  • F07041 - rosette leaf::decreased size / rosette leaf::increased width / fruit::increased thickness
  • F10308 - Specific phenotypes were NOT observed.
  • F20522 - Specific phenotypes were NOT observed.
  • F23829 - Specific phenotypes were NOT observed.
  • F25614 - Specific phenotypes were NOT observed.
  • F28647 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found