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  3. RAFL06-84-M16

RAFL06-84-M16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda03878)

full reading [+] show sequence

Nucleotide sequence: RAFL06-84-M16 - full reading 
GTCTCCTCTT CGCTTCGGTA CTTCCGAAGA TTTCATTTTC TAGACACTCC 
ATCCTCTCTC ACACACACCT TAATTTCGAA TTTTTGTCAA TTGGTGATGC 
AGTTACTCTG AACTCGAGCT GAGAGAGAGG CATAGAGATC CTTGCGATTC 
GTTGTATCCG TAACATTTAA CAATCTCGTT TTGTTTTTCT TCTGTTCCTC 
TATTATCAAC AATCAAATGG CTAATGCATC TGGGTTCTTC ACTCATCCTT 
CAATTCCTAA CTTGCGAAGC AGAATCCATG TTCCGGTTAG AGTTTCTGGA 
TCTGGGTTTT GCGTTTCCAA TCGATTCTCT AAGAGGGTTT TGTGCTCTAG 
CGTCAGCTCC GTCGATAAGG ATGCTTCGTC TTCTCCTTCT CAATATCAAC 
GACCCAGGCT AGTGCCGAGT GGCTGCAAAT TGATTGGATG TGGATCAGCA 
GTTCCAAGTC TTCTGATTTC TAATGATGAT CTCGCTAAAA TAGTTGATAC 
TAATGATGAA TGGATTGCTA CTCGTACTGG TATTCGCAAC CGTCGAGTTG 
TCTCAGGCAA AGATAGCTTG GTTGGCTTAG CAGTAGAAGC AGCAACCAAA 
GCTCTTGAAA TGGCTGAGGT TGTTCCTGAA GATATTGACT TAGTCTTGAT 
GTGTACTTCC ACTCCTGATG ATCTATTTGG TGCTGCTCCA CAGATTCAAA 
AGGCACTTGG TTGCACAAAG AACCCATTGG CTTATGATAT CACAGCTGCT 
TGTAGTGGAT TTGTTTTGGG TCTAGTTTCA GCTGCTTGTC ATATAAGGGG 
AGGCGGTTTT AAGAACGTTT TAGTGATCGG AGCTGATTCT TTGTCTCGGT 
TTGTTGATTG GACGGATAGA GGGACTTGCA TTCTATTTGG AGATGCTGCT 
GGTGCTGTGG TTGTTCAGGC TTGTGATATT GAAGATGATG GTTTGTTCAG 
TTTTGATGTG CACAGCGATG GGGATGGTCG AAGACATTTG AATGCTTCTG 
TTAAAGAATC CCAAAACGAT GGTGAATCAA GCTCCAATGG CTCGGTGTTT 
GGAGACTTTC CACCAAAACA ATCTTCATAT TCTTGTATTC AGATGAATGG 
AAAAGAGGTC TTTCGCTTTG CTGTCAAATG TGTTCCTCAA TCTATTGAAT 
CTGCTTTACA AAAAGCTGGT CTTCCTGCTT CTGCCATCGA CTGGCTCCTC 
CTCCACCAGG CGAACCAGAG AATAATAGAC TCTGTGGCTA CAAGGCTGCA 
TTTCCCACCA GAGAGAGTCA TATCGAATTT GGCTAATTAT GGTAACACGA 
GCGCTGCTTC GATTCCGCTG GCTCTTGATG AGGCAGTGAG AAGCGGAAAA 
GTTAAACCAG GACATACCAT AGCGACATCC GGTTTTGGAG CCGGTTTAAC 
GTGGGGATCA GCAATTATGC GATGGAGGTG AATGGCTAAG TCCAACAATG 
TAAGTTAACT TCAGAGCCAA AGCTTTTTTC TCCCTCGAGG AACACTGGAA 
ATTGGTTTAA CCGGTCTTGT TTAGTCCGGT TAAACTAAAG GTAAAGCACA 
TTTTGTCTGA ATTCAGTCTC TCTTTTTTTG AAGGTTCATT GTTGTTACTT 
GTTTAACTTT GTTAGTTATT TCGAATGCTA ATAACCAAAA AGAAGAAAGA 
AAAGGGAGCA TTCTTTCATC ATTTCTTGTT TGTAATGTTA AGACAACATT 
TCTCCATTTG CTTAAATCTT TTCTTCTTCT GTTTTTGAGA ACTATTAGAA 
TCAAAATGTT TTATATTTCA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT1G62640.1 [+] show detail - 3-ketoacyl-acyl carrier protein synthase III
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Thiolase-like, subgroup 4.1e-41
Gene3D Thiolase-like, subgroup 1.9e-26
superfamily Thiolase-like 4.4e-91
HMMPfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal 6.2e-38
HMMPfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 8.6e-28
HMMTigr Beta-ketoacyl-acyl carrier protein synthase III (FabH) 1.1e-128
HAMAP Beta-ketoacyl-acyl carrier protein synthase III (FabH) 38.718

See the detailed result >

AT1G62640.1

Model type
Protein coding
Short Description
3-ketoacyl-acyl carrier protein synthase III
Curator Summary
3-ketoacyl-acyl carrier protein synthase III (KAS III)
Computational Description
3-ketoacyl-acyl carrier protein synthase III (KAS III); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, 3-oxoacyl-[acyl-carrier-protein] synthase activity, catalytic activity; INVOLVED IN: lipid biosynthetic process, metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thiolase-like (InterPro:IPR016039), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal (InterPro:IPR013747), 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III (InterPro:IPR013751), Beta-ketoacyl-acyl carrier protein synthase III (FabH) (InterPro:IPR004655); Has 11800 Blast hits to 11794 proteins in 2811 species: Archae - 187; Bacteria - 7763; Metazoa - 5; Fungi - 2; Plants - 1625; Viruses - 0; Other Eukaryotes - 2218 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL06-84-M16 introduced

  • F21423 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found